Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  304 bits (779), Expect = 2e-86
 Identities = 257/1037 (24%), Positives = 487/1037 (46%), Gaps = 51/1037 (4%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L D ++ R    + L + + V G+ ++  +     PDV  P++ VS S+ G S +  E  
Sbjct: 3    LSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIMESQ 62

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            I + LE E+  I G+ E+T+T   G + + ++F +G +L + ++DVRDAV  A+ +LP D
Sbjct: 63   ITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLPED 122

Query: 124  SDEPTVNEVTLAAEQPVLSVVLYGTVPERT--TVLIARQLRDKLESFRQILSVDIAGDRE 181
            +++P V++   + E P + V L  +V +RT  T    R L D+      + S+ I+G   
Sbjct: 123  ANDPVVSKDNGSGE-PSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGLY 181

Query: 182  EIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVL 241
            +++ + + P  M    +  +DI + +   N     G V       SV+   ++ + KD  
Sbjct: 182  KVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDFD 241

Query: 242  ELPIKVEGKQV-ITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVK 300
             L ++       I   DVA V    ++  S  + DG   + L +  +S  N +   + V 
Sbjct: 242  YLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEVH 301

Query: 301  AVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTS 359
              + + Q  D  P    +   +D +  +   +N++ N +     LVV+V+   +G VR +
Sbjct: 302  KEVDKIQ--DFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRAT 359

Query: 360  LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMH 419
            L+  V++P S ++  +   +FG ++N++ L ALI+A+G++VD AIVV E     +++G  
Sbjct: 360  LIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEE 419

Query: 420  RSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMAL 479
               A     + + + + A+TA  +  F P+ F   + G       + L  ++  S ++AL
Sbjct: 420  PLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIAL 479

Query: 480  LFVPVLGSLFGRPQKVTQAN--QARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILC 537
               PVL S      K+ +AN    R     +  F++   + K Y+  +  AIR   ++L 
Sbjct: 480  TLTPVLSS------KLLKANVKPNRFNRFVDRGFAR---MEKLYHVGVTHAIR--FRLLA 528

Query: 538  GALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVR-----SYGDLSLN---EKDRIMSD 589
              ++++      +    + A+  P+ D       V+     SY  ++ N    +DR+M  
Sbjct: 529  PLVILACIGGSVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPL 588

Query: 590  IEQVMLGHDEFESVYTRTGGDDEIGVVQITPVDWQYRR-SVKAIIEELEQVTDTFPGVEI 648
            + Q +L     ++        D+ G V +   DW++R  + +  +  + +     P V +
Sbjct: 589  LGQGVLRSFSVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV 648

Query: 649  EYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWKI 708
                P         ++  +      +L K AQ ++  A A+P +     + ++   +  +
Sbjct: 649  RPMMPGFRGQSSEPVQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIV 708

Query: 709  DIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVR-YPSEYRDIGRFD 767
             + ++ A+        V  T++ +  G K   Y+  D  EE D+ +R   + + ++G   
Sbjct: 709  TVDKERAAELGISVDDVSQTLEVMLGGRKETTYV--DRGEEYDVYLRGDENSFNNVGDLS 766

Query: 768  QLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAIEQA 826
            Q+ +++A+G LV L     I        +   + ++ I++ A++ +GY L   L  +E  
Sbjct: 767  QIYMRSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENK 826

Query: 827  LRELNLPSSVEFRIRGQNEE--QEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLILT 884
              EL LP  +     G++++  +  S++F+   F +AL    ++L  QF SF    +++ 
Sbjct: 827  SIEL-LPKDISIGYTGESKDFKENQSSIFI--VFGLALLVAYLVLAAQFESFINPLVVMF 883

Query: 885  AVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREEA 944
             V     G F GLL+  +    I S IG+I L G+V  N I++++  NQL  RGL+ ++A
Sbjct: 884  TVPMGVFGGFLGLLVTSQGIN-IYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKA 942

Query: 945  ILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGGL 1004
            I+    +RLRP+L+T  TT++G +P++              GA S    + + T V  G+
Sbjct: 943  IIDASTRRLRPILMTAFTTLVGAIPLIFST-----------GAGSESRIA-VGTVVFFGM 990

Query: 1005 AFATVLTLVLTPCLLML 1021
            AFAT +TL + P +  L
Sbjct: 991  AFATFVTLFVIPAMYRL 1007