Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  276 bits (706), Expect = 5e-78
 Identities = 248/1060 (23%), Positives = 478/1060 (45%), Gaps = 61/1060 (5%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            +I A +   R +  ++  +LVAG     ++P+   P +T     V   + G S    E L
Sbjct: 1    MIKAFVENGRLVSLVIALLLVAGFGAMSSLPRTEDPHITNRFASVITPYPGASAERVEAL 60

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGV-DLAKAMADVRDAVDLAKPKLPA 122
            +   LE ++R +E +K + +T+  G + + LE    V D     +  RD +  A+  LP 
Sbjct: 61   VTEVLENQLRRLEEIKLIQSTSRPGISVIQLELKDTVTDTDPVWSRARDLLADARNSLPD 120

Query: 123  DSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVL--IARQLRDKLESFRQILSVDIAGDR 180
            D   PT+++    A   +LS+V   +   R  +L   A++L+ +L        V + G  
Sbjct: 121  DIQTPTLDDQVGYAYTAILSLVWNDSSQPRVDMLNRYAKELQSRLRLLAGTDFVKLYGAP 180

Query: 181  EEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDV 240
            EE + + +D   M    L    I N++   +  +AAG ++  + R  V+V    +S   +
Sbjct: 181  EEEILVQLDGYKMSQLQLTPGTIANILRSADSKIAAGEINNNHFRALVEVSGELDSQSRI 240

Query: 241  LELPIKVEGK-QVITFGDVATVRKSFRDP-ESFARLDGKPAIVLDIKKRSGENIIETVEL 298
             ++P+KV+   Q+I  GD+AT+ +  + P +S   +DG+  + +  +  +   +      
Sbjct: 241  RQVPLKVDSDGQIIRLGDIATISRQPKSPADSIGLVDGEQGVFVAARMLNNTRVDIWQGQ 300

Query: 299  VKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRT 358
            VK ++ E     D P N+ V+ + +++      L  L  N++   ++++ V++  LG+R 
Sbjct: 301  VKQLVDEFNI--DLPANIKVEWLLEQNSYTSERLGGLVINLIQGFVIILSVLLLTLGLRN 358

Query: 359  SLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGM 418
            +++V +S+P + L  L  +   GL ++ + +  L++A+G++VD AIV+ +   +R Q+GM
Sbjct: 359  AVIVAISLPLTALFTLACMKYIGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRQQGM 418

Query: 419  HRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMA 478
             R  A  +A   +  P+  ST TT+ AFAP++  P  TGEF+  + + +M  L  S +++
Sbjct: 419  SRLNAVTEALHHLWLPLAGSTITTILAFAPIVLMPGATGEFVGGIAMAVMFALFGSYLIS 478

Query: 479  LLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCG 538
               +  L   F    K     Q      H  +    +G    + ++L  A+  P   L  
Sbjct: 479  HTLIAGLAGRFSLEGKNPIWYQ------HGINLPLVSGY---FQASLRFALNRP--RLSA 527

Query: 539  ALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNE-------KDRIMSDIE 591
             L+ +  +   Y    +  +FFP  D   F +++     +SL          D+ +  IE
Sbjct: 528  ILIGTIPLLGFYASGKMTEQFFPPSDRDMFQIELYLAPHVSLENTLSQVYLMDKQLHQIE 587

Query: 592  QV-----MLGHDE---FESVYTRTGGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTD-T 642
             +     ++G +    + ++  R  G        I  +D++      A+I  L+Q  D  
Sbjct: 588  GITQVDWVVGGNTPSFYYNLTQRQQGATNYAQAMIKTIDFE---RANALIPVLQQRFDKA 644

Query: 643  FPGVEIEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKP 702
            FP  ++  +  + GPP    +E+ I     + L     ++R    A P + +     S  
Sbjct: 645  FPEAQVLVRKLEQGPPFNAPVELMIFGPDLETLRTLGDEIRHILAATPDVIHTRATLSAG 704

Query: 703  GIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRD 762
                 + +  D +       T +   VQ  T G+  G  L  +  E + I VR     R+
Sbjct: 705  SPKVLLQVNEDASLISGLSLTNIARQVQMSTTGVIGGSVL--EQTESLPIRVRLGENSRE 762

Query: 763  -IGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALEL 820
               R  ++++ T  G  VPL+  +    +  +  I R +G+RV ++ A +  G   A  L
Sbjct: 763  QASRLSEIQLMTPSGTAVPLSALSHNEVQVSRGAIPRRNGQRVNTIEAYIVSGVLPAQVL 822

Query: 821  PAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSF-YQA 879
              ++  +  + LP+     I G++ ++  +   L    ++ +  +   ++  FNSF   A
Sbjct: 823  NDVKDKVAAIKLPAGYRIEIGGESAKRNEAIGNLLSNIILVVTLLLATVVLSFNSFRLTA 882

Query: 880  FLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGL 939
             ++L+A+  + +G+ A + +F  PFG  +  I ++ L G+ +N  IV++    +L    +
Sbjct: 883  IILLSALQSAGLGLLA-VFVFGYPFGFPVI-IALLGLMGLAINAAIVILAELEELPAARM 940

Query: 940  SREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATA 999
              +  I+ T     R +  TT+TT+ G +P+++                   +W   A A
Sbjct: 941  GDKAVIVSTVSSCGRHISSTTITTVGGFIPLII---------------AGGGFWPPFAIA 985

Query: 1000 VAGGLAFATVLTLVLTPC--LLMLGRRRKGVSEDEAPQDA 1037
            +AGG    T+L+LV  P   LL++ +R    +   +PQ A
Sbjct: 986  IAGGTLLTTLLSLVWVPTMYLLLMTKRHSTQAATLSPQMA 1025