Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1091 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  338 bits (866), Expect = 2e-96
 Identities = 301/1108 (27%), Positives = 528/1108 (47%), Gaps = 125/1108 (11%)

Query: 3    TLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAER 62
            ++I  ++ R  T+   ++ I++ G+  +  +  +  PD++ P + +   + G +P + E+
Sbjct: 2    SIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVEQ 61

Query: 63   LIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPA 122
            L+ +P+E+ +  ++G++++++ +  G + VVLEF  G  +  A  DVR+ +D     LP 
Sbjct: 62   LVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIA--LPL 119

Query: 123  DSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIAR-------QLRDKLESFRQILSVD 175
            D  +P +       + P++ + L  +VP  +   + +       +L+ +LE+   + +V 
Sbjct: 120  DVKKPLLLRFNPNLD-PIMRLAL--SVPNASEAELKQMRTYAEEELKRRLEALSGVAAVR 176

Query: 176  IAGDREEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFE 235
            ++G  E+ V I ++   +    L+  DI   I   N  ++AG V  G   + V+  + F 
Sbjct: 177  LSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFN 236

Query: 236  SLKDVLELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIET 295
            SL ++ ++ +  + + ++   +VAT+  ++++     R+  + +I L I K    N   T
Sbjct: 237  SLDELGQVIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDAN---T 293

Query: 296  VELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAIL- 354
            V + K +  E    +  P    ++ I+D+SE ++  ++++ ++ L   +L ++VI   L 
Sbjct: 294  VAVAKKLRDELVKINKDPQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLR 353

Query: 355  GVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRM 414
             +  +L++ +SIP S +    ++    +++NI+ L  + +A+G+LVD AIVV E  DR  
Sbjct: 354  NIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCR 413

Query: 415  QEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTAS 474
             EGM + +A     K +A  I AST TTLA F PL+F   + G       LT+   L AS
Sbjct: 414  SEGMSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLAS 473

Query: 475  LVMALLFVPVLGSLFG------------RPQKVTQANQAR----------MVALHN---- 508
            L++AL  +P+L S  G            + +  T+  + +          +V L N    
Sbjct: 474  LLVALTSIPMLASREGFKILPELMKKTPKEKPTTKLGKLKHYSATVFSFPIVLLFNYLPS 533

Query: 509  ---------GDFSQ----------ATGITKAYYST-------LAIAIRHPIKILCGALLM 542
                     G F            ++G    Y+ST       LAIA+R  +      LL+
Sbjct: 534  ALLTFVLIIGRFFSWLLGLIMRPLSSGFNFVYHSTESIYHKLLAIALRKQL----ATLLL 589

Query: 543  SAAIAFAYGK--AGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVMLGHDEF 600
            +  I  A       LG E  P ++   F V++      ++ E DRI+  +   +    E 
Sbjct: 590  TTGITGACISLLPRLGMELIPPMNQGEFYVEILLPPGTAVGETDRILQQLALSIKDRPEV 649

Query: 601  ESVYTRTG-----------GDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVEIE 649
            +  Y++ G           G +  G +Q+  VD      V  ++ +  +     P +E +
Sbjct: 650  KHAYSQAGSGGLMTSDTARGGENWGRLQVELVDHSAYHQVTQVLRDTAR---RIPALEAK 706

Query: 650  YKFPDA---GPPVEHDL---EIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPG 703
             + P+      P+E +L   ++ +  R AD L  A      +A+ N   T+L D   +  
Sbjct: 707  IEQPELFSFKTPLEIELTGYDLALLKRSADSLVNALSASDRFADIN---TSLRDGQPELS 763

Query: 704  IDWKIDIRRDDASRFAA---DATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEY 760
            I       R D +R AA   DA  V N +     G     Y     D ++DILVR   + 
Sbjct: 764  I-------RFDHARLAALGMDAPTVANRIAQRVGGTVASQYTV--RDRKIDILVRSQLDE 814

Query: 761  RD-IGRFDQLRVK-TAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLAL 818
            RD I   D L +   +   + L+  A++  +     I+R+  +RV  V A+L  G +L+ 
Sbjct: 815  RDQISDIDTLIINPDSSQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYG-DLSD 873

Query: 819  ELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQ 878
             +   +Q L    LP+SV+ R  GQNEE EHS   L+ A ++A+  + +++ +QF S   
Sbjct: 874  AVADAQQILAAQVLPTSVQARFGGQNEEMEHSFQSLKIALILAVFLVYLVMASQFESLLH 933

Query: 879  AFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRG 938
              LIL AV  +  G   GL I Q    +++  IG+I LAGIVVNN IVL+D  NQL   G
Sbjct: 934  PLLILVAVPMALAGSVLGLYITQTHLSVVVF-IGLIMLAGIVVNNAIVLVDRINQLRSEG 992

Query: 939  LSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLAT 998
            + + EAI      RLRP+++TT+TT+LGLLPM L      +    E  AP       +A 
Sbjct: 993  VEKLEAIRVAAKSRLRPIMMTTLTTVLGLLPMALG-----LGDGAEVRAP-------MAI 1040

Query: 999  AVAGGLAFATVLTLVLTPCLLMLGRRRK 1026
             V  GL+ +T+LTL++ P L  +  R+K
Sbjct: 1041 TVIFGLSLSTLLTLIVIPVLYAMFDRKK 1068