Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1031 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  320 bits (820), Expect = 3e-91
 Identities = 253/1052 (24%), Positives = 487/1052 (46%), Gaps = 51/1052 (4%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            L D ++ R      + + ++  G+  +  +P    P++  PI+ +  +++G S +  E  
Sbjct: 3    LTDLSVKRPVFASVISLLLVAFGLVAFGKLPLREYPNIDPPIVSIETNYRGASAAVVESR 62

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            I + +E  +  +EG++ +++++S+G + V LEF++  ++  A  DVRD +      LP +
Sbjct: 63   ITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISGLLDNLPEE 122

Query: 124  SDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIA----RQLRDKLESFRQILSVDIAGD 179
            +D P V +     ++ ++ + L     + TT+ +     R L D+L     +  + I G 
Sbjct: 123  ADPPEVQKAN-GGDEVIMWLNLESD--QMTTLELTDYTRRYLADRLSVVDGVSMIRIGGG 179

Query: 180  REEIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKD 239
            +   + + +D   + S  L  +D+   +   N  + AG +++    F+V++   + S +D
Sbjct: 180  KVYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLERSYRSAED 239

Query: 240  VLELPIKVEGKQ--VITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVE 297
               L I V+G+   ++  GDVA V     +     R + +  I L + K+S  N +E   
Sbjct: 240  FANLVI-VQGEDGYLVKLGDVARVEVGSDEDRIMFRGNRESMIGLGVSKQSTANTLEVAR 298

Query: 298  LVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-V 356
             V A++ +       P  + +K  +D S  ++  + ++   + +A++LV++VI   LG V
Sbjct: 299  GVNALVDKINPT--LPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSV 356

Query: 357  RTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQE 416
            R  L+  +++P S L   +VL   G T+N++ L A+I+A+GM+VD AIV+ E   RR++E
Sbjct: 357  RAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIHRRIEE 416

Query: 417  GMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLV 476
            G    +A    A+ +A+ + A+T   +A F P+ F     G+  K   + + A +  S +
Sbjct: 417  GDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVIFSSI 476

Query: 477  MALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKIL 536
            +AL   P++ +   +P +       ++ ++        TGI++ Y S+L  A+  P+ +L
Sbjct: 477  VALTLSPMMCAKLLKPAEQDSWLVRKVDSI-------MTGISRRYQSSLEGAMTKPVLML 529

Query: 537  CGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIE---QV 593
               L+   +  F   K  +  EF P+ D     + V      S    +  M+++E     
Sbjct: 530  VIVLIALGSSVFLAQK--VPQEFAPQEDRGSLFLMVNGPQGASYEYIESYMTEVESRLMP 587

Query: 594  MLGHDEFESVYTRT------GGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVE 647
            ++   + + +  R         D   G+  I   DW  RR +K +I ++ +      GV+
Sbjct: 588  LVDSGDIKRLLIRAPRGFGRAADFSNGMAIIVLEDWGQRRPMKEVIGDINKRLADLAGVQ 647

Query: 648  IEYKFPDA-GPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDW 706
                   A G  V   ++  I     ++L      +      NP L  L  +  +     
Sbjct: 648  AFPVMRQAFGRGVGKPVQFVIGGPSYEELAAWRDIMMQKVAENPKLLGLDHDYKETKPQL 707

Query: 707  KIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRDIGRF 766
            ++ I RD A+      + +G T++ +     +  ++ D   EE D++V      ++    
Sbjct: 708  RVVIDRDRAASLGVSISNIGRTLESMLGSRLVTTFMRD--GEEYDVIVEGERSNQNTAAD 765

Query: 767  DQ---LRVKTAQGLVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALELPAI 823
             Q   +R +  + L+PL+N   +       +++R +  R I++ A L +GY+L   L  +
Sbjct: 766  LQNIYVRSERTKELIPLSNLVTVEEFADASSLNRYNRMRAITIEASLADGYSLGEALDYL 825

Query: 824  EQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQAFLIL 883
             Q  R  NLP+      +GQ+ + + S   +   F++AL  + ++L  QF S+    +I+
Sbjct: 826  NQVAR-ANLPAEAVISYKGQSLDYQESGSSMYFVFLLALGIVFLVLAAQFESYIHPMVIM 884

Query: 884  TAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGLSREE 943
              V  +TVG   GL    +    I S IG+I L G+   N I++++  NQL  +G+  + 
Sbjct: 885  LTVPLATVGALLGLWFTGQSLN-IYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVDFDR 943

Query: 944  AILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATAVAGG 1003
            AI++   QRLRP+L+T +TT  G +P+VL        + +            +   V  G
Sbjct: 944  AIIQASCQRLRPILMTGITTAAGAVPLVLATGAGAETRFV------------IGVVVLAG 991

Query: 1004 LAFATVLTLVLTPCLLMLGRRRKGVSEDEAPQ 1035
            +  AT+ T+ + P    L  R  G  E  A Q
Sbjct: 992  IMLATLFTIYVIPTAYGLFARNSGSPEAIAQQ 1023