Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1030 a.a., hydrophobe/amphiphile efflux-1 family RND transporter from Klebsiella michiganensis M5al

 Score =  276 bits (707), Expect = 4e-78
 Identities = 258/1057 (24%), Positives = 464/1057 (43%), Gaps = 82/1057 (7%)

Query: 9    LSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERLIVRPL 68
            + R R  + + + +   G  +   IP E  P +T P+I VS S  G S +D    I  PL
Sbjct: 6    IRRPRFAMVIALLMTFVGAVSLKLIPVEQYPQITPPVINVSASWPGASAADVAEAIAAPL 65

Query: 69   EQEMRSIEGVKEMTATAS-EGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPADSDEP 127
            E ++  ++ +  M +T+S EG  S+ L F  G D   A  DV++ V  A  +LPAD  + 
Sbjct: 66   ETQLNGVDHMLYMESTSSDEGTYSLSLTFAAGTDADLAAIDVQNRVSQAVAQLPADVQQN 125

Query: 128  TVNEVTLAAEQPVLSVVLYGTVPERTTVLIAR----QLRDKLESFRQILSVDIAGDREEI 183
             V +V   A   ++ V LY  +   + + ++     Q+R+ L     +  V I G R+  
Sbjct: 126  GV-QVRKRATNLLMGVSLYSPLGTLSPLFVSNYASTQVREALARLPGVGEVQIFGARDYS 184

Query: 184  VEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVLEL 243
            + I + P  M +  +   D+   +   N   AAG V T         P VF   +  L +
Sbjct: 185  MRIWLRPDRMNALNITTDDVSQALREQNVQGAAGQVGT---------PPVFNGQQQTLTI 235

Query: 244  -------------PIKVEGK---QVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKR 287
                          I V      Q++   DVAT+    R   S A+L+GK +  L I   
Sbjct: 236  NGIGRLSDAAGFGQIVVRSGDRGQLVRLSDVATIELGARSYSSGAQLNGKDSAYLGIYPT 295

Query: 288  SGENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVV 347
               N ++    V+A L    AR  +P +L  +  +D +  V   + ++  ++   ++ VV
Sbjct: 296  PTANALQVASAVRAELTRLHAR--FPADLTWEVKFDTTRFVAATIKEIGVSLALTLLAVV 353

Query: 348  VVIIAIL-GVRTSLLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVV 406
            VV+   L   R +L+V ++IP S +    VL   G + N + LFA+I+A+ M+VD AIVV
Sbjct: 354  VVVSLFLQSWRATLIVALAIPVSLIGTFAVLYALGYSANTLSLFAIILALTMVVDDAIVV 413

Query: 407  TEFADRRMQEGMHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLT 466
             E  + +M EG+ R  A  +A +++A P+ A+T   LA F P+   P + GE  +   +T
Sbjct: 414  VESVESKMAEGLARGAATAEALRQIAGPVIATTLVLLAVFVPVAMLPGIVGELYRQFAVT 473

Query: 467  LMATLTASLVMALLFVPVLGSLF--GRPQKVTQANQARMVALHNGDFSQATGITKAYYST 524
            L   +T S V+AL   P L +L    RPQ        +  A+  G       +   Y   
Sbjct: 474  LSTAVTLSSVVALTLTPALCALLLRSRPQ--------QPAAIWRGFNRGLDTVRDGYGRL 525

Query: 525  LAIAIRHPIKILCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKD 584
            +    R P   L      +  + F++     G  F P+ D  +F   V+     SL   +
Sbjct: 526  VGRMNRRPWLALAATTAAAGVVVFSFTTMPKG--FLPQEDQGYFFASVQLPEAASLERTE 583

Query: 585  RIMSDIEQVMLGHDEFESVYTRTG-------GDDEIGVVQITPVDWQYRRSVKAIIEELE 637
             +M+   +++  +   E V   +G            G + +   DW  R  ++A++E+++
Sbjct: 584  AVMAQARELLKLNPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLEAVMEKVQ 643

Query: 638  QVTDTFPGVEIEYKFPDAGPPVEH--DLEIEISARVAD---DLDKAAQQVRLWAEANPAL 692
                  P   I    P   P + +     + I A+      +L++  QQV   A   P L
Sbjct: 644  GQLMGLPEATIMTFAPPTLPGLGNASGFNLRILAQAGQSPAELEQVTQQVLRTANQYPQL 703

Query: 693  TNLSDNGSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDI 752
            + +    S       + + RD A+R       + +++Q    G + GD+    ++    +
Sbjct: 704  SRVFTTWSSNVPQLTLTVDRDQAARLNVPVARIFSSLQTAFGGTRAGDF--SINNRVYHV 761

Query: 753  LVRYPSEYRD-IGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADL 810
            +++   ++R+   +  +L V++  G  V L+N   I P      I + +    +SV    
Sbjct: 762  VMQNEMQWRERAEQISELYVRSDSGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSA 821

Query: 811  KEGYNLALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMA---I 867
             EG +    +  +EQ L + NLP   ++   G + +++ +     +A  + LAA+A   +
Sbjct: 822  TEGVSSRTAMAVMEQIL-QANLPHGYDYAWSGISWQEQQTG---NQAVWIVLAAVAMAWL 877

Query: 868  ILITQFNSFYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVL 927
             L+ Q+ S+     ++ +V+F+  G    L        + +  IG++ L  +   N I++
Sbjct: 878  FLVAQYESWTLPASVMLSVLFAIGGSLLWLWWAGYANDVYVQ-IGLVLLIALAAKNAILI 936

Query: 928  IDTYNQLLKRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGA 987
            ++      + G+S  +A      +R R V++T V+ I+G++PM+L       +++I    
Sbjct: 937  VEFARAKREEGMSIVDAAREGATRRFRAVMMTAVSFIIGIVPMMLATGAGAQSRRI---- 992

Query: 988  PSTQWWSQLATAVAGGLAFATVLTLVLTPCLLMLGRR 1024
                    + T V  G+  ATV+ ++  P L +L +R
Sbjct: 993  --------IGTTVFSGMLVATVIGILFIPSLYVLFQR 1021