Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1022 a.a., cation/multidrug efflux pump acrB5 from Caulobacter crescentus NA1000

 Score =  339 bits (870), Expect = 5e-97
 Identities = 266/1047 (25%), Positives = 480/1047 (45%), Gaps = 53/1047 (5%)

Query: 2    FTLIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAE 61
            F L   A+ R +  L     +++ G   + +IP+   P   IPI+ V     G  PS+ E
Sbjct: 3    FDLSTFAVRRWQFTLVAFGLLVMLGFNAFTSIPRSEDPHFPIPIVIVRAVLPGAEPSEME 62

Query: 62   RLIVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLP 121
            +L+V P+E  +  ++ ++++ + + +G A V + F   VD  +    V   V+  +  LP
Sbjct: 63   QLVVDPIEDAVDGLDNIEKVESVSLDGAAVVSVHFTWDVDPERKYDQVVREVNAIRGNLP 122

Query: 122  ADSDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVLIARQLRDKLESFRQILSVDIAGDRE 181
                   +          V   +   T+P R    +A +LR++L+    +      G   
Sbjct: 123  TGLARLDIQRARTTEVSVVQVALTSDTLPMRRLEKVADRLRERLDRVPGVREAQYWGAPP 182

Query: 182  EIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVL 241
              V++ +D   + +  L  + + + +         G V  G  RF+VK    F  LK + 
Sbjct: 183  SDVQVTLDLARLSALKLPATAVTDALRAAGAEAPIGAVQAGERRFNVKSGGAFRDLKTIG 242

Query: 242  ELPIKVEGKQVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVKA 301
            + P++  G +V+   DVAT+  + ++P    R +GK A+ + +K++ G+++ +  + V+ 
Sbjct: 243  DTPVRSIGGKVVRVSDVATIGWAQQEPTHVTRFNGKRAVFITVKQKDGQDVAKITQEVRK 302

Query: 302  VLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILGVRTSLL 361
            VL E +     P  + ++  + ++E+VK  L +L  +   A++LV++ ++  LG R  ++
Sbjct: 303  VLDEYERA--LPAGVKLERAFFQAENVKHRLKNLFRDFGIALVLVLITLLP-LGPRAGVV 359

Query: 362  VGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRS 421
            V VSIP S L GL +L  FG T+N + +   ++++G+LVD +IV+TE   RR++EG  R+
Sbjct: 360  VMVSIPLSLLIGLSMLQAFGFTLNQLSIAGFVLSLGLLVDDSIVITENIARRIREGEERT 419

Query: 422  EAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLF 481
            EA  + A+++   +   TAT + AF PL+  P  +G ++K LP+T++ T+ ASL+++L  
Sbjct: 420  EAAVNGARQIGLAVVGCTATLMLAFLPLMALPAGSGAYIKSLPVTVLCTVGASLLVSLTI 479

Query: 482  VPVLGSLFGRPQKVTQANQARMVALHNGDFSQATGITKAYYSTLAIAIRHPIKILCGALL 541
            +P L S         + N   ++   NG      GI + Y   L  ++  P   L  AL+
Sbjct: 480  IPFLASRILDKHSDPEGN--ALLRAVNG------GIQRFYRPVLHASLARPWLAL--ALM 529

Query: 542  MSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVM------- 594
            ++           +G+  FP  + P F +++ +    SL   D+ +  ++  +       
Sbjct: 530  LALCATTVPLVKVIGSSLFPPAETPQFLIRIETPDGASLARTDQALRFVDARLAKEPEIL 589

Query: 595  -----LGHDEFESVYTRT--GGDDEIGVVQITPVDWQYRRSVKAIIEELEQVTDTFPGVE 647
                 LG    +  Y +T     +    V  +   W+  +S K +++ L      +PG  
Sbjct: 590  WRASNLGRGNPQIFYNKTQRESSNSFAEVYASFEAWKPGKSDK-VLDALRADFAKYPGAR 648

Query: 648  IEYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNLSDNGSKPGIDWK 707
            I     + GPP++  + I I+ +  + L   A +     +  P   ++S+       D  
Sbjct: 649  ITVVAFENGPPIDAPIAIRITGQNLEVLKALAARTEAALKDTPGARDVSNPMRLDRTDLD 708

Query: 708  IDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYPSEYRD----- 762
            + +    A+     A       +   +G +   +   D D+   + VR P+   D     
Sbjct: 709  LGVDEAKAAALGVPAGAARRVTRLALSGEEAARFRDPDGDDYA-VRVRLPTAQVDGAARN 767

Query: 763  -IGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKEGYNLALEL 820
             +   + + V TA+G   PL   A          I R D  R ++V + +  GY  A   
Sbjct: 768  PLSALNGVYVPTAEGEAAPLGAIATPTLRSSPARIDRFDRERTVTVTSYVATGYLTAKVT 827

Query: 821  PAIEQAL-RELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNSFYQA 879
              + Q L +E+ +P      + GQ E Q  S   L  A +VA+  +  +L+ +F  F  A
Sbjct: 828  QDVVQRLEKEVPMPPGYRLSLGGQAEAQSESFAGLGAAVLVAIFGILAVLVLEFQKFKTA 887

Query: 880  FLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLLKRGL 939
             ++   + F   G    L +         + IG+IAL GI + N+I+L+D   QL + G+
Sbjct: 888  LVVAGIIPFGIFGAVLALALTGNSLSFTAT-IGLIALIGIEIKNSILLVDFTEQLRREGM 946

Query: 940  SREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQLATA 999
            +  +AI + G  R  PVLLT+VT I GLLP+ LE                +  +S LA A
Sbjct: 947  NLHDAIEKAGEVRFLPVLLTSVTAIGGLLPLALE---------------RSGLYSPLAIA 991

Query: 1000 VAGGLAFATVLTLVLTPCLLMLGRRRK 1026
            + GGL  +T+L+ V TP +  L  R K
Sbjct: 992  IIGGLITSTLLSRVATPVMYWLTARGK 1018