Pairwise Alignments

Query, 1039 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1024 a.a., acriflavin resistance protein (RefSeq) from Shewanella sp. ANA-3

 Score =  285 bits (730), Expect = 9e-81
 Identities = 256/1043 (24%), Positives = 469/1043 (44%), Gaps = 64/1043 (6%)

Query: 4    LIDAALSRTRTMLTLLVFILVAGVATYLTIPKESSPDVTIPIIYVSVSHQGISPSDAERL 63
            +I AA+SR  +   L   + + G      +P +  P V  P+I +S+  QG +P D ++ 
Sbjct: 2    IIKAAISRRISTAVLAFGLAIFGALNLNMLPVDFLPSVKYPLIKLSIIWQGATPEDIDQN 61

Query: 64   IVRPLEQEMRSIEGVKEMTATASEGHASVVLEFNVGVDLAKAMADVRDAVDLAKPKLPAD 123
            +  P+E+E+ S++G+  ++++A EG   + + +  GVD+  A  D   A + +   LP D
Sbjct: 62   LADPIERELASVDGLDYLSSSAIEGLYQLDVNYRYGVDVDVAYQDTLAAFNRSTKNLPVD 121

Query: 124  SDEPTVNEVTLAAEQPVLSVVLYGTVPERTTVL--IARQLRDKLESFRQILSVDIAGDRE 181
             + P + +    ++ P++  V      + T +   I   L  +L S   + ++D+AG  E
Sbjct: 122  IEAPVIIKAD-PSQLPIVQAVFESESMDLTQLRTWIDSWLTQRLLSASGVAAIDVAGGLE 180

Query: 182  EIVEIIVDPLLMESYGLDQSDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSVFESLKDVL 241
              + I VD   +E++GLD + +  +++  N     G V   Y    V+V   F  L  + 
Sbjct: 181  REIRIFVDDEKLEAHGLDLTTLERVLSAENLQRVGGRVTGKYRENIVRVMGEFSQLAVIQ 240

Query: 242  ELPIKVEGK-QVITFGDVATVRKSFRDPESFARLDGKPAIVLDIKKRSGENIIETVELVK 300
            +L +  +    ++   DVA V+ S  D     RL+G PA+ +++ K++  N + TV+ V+
Sbjct: 241  DLVLSRDSSGSIVRIRDVAEVKDSHEDIRMLTRLNGHPAVKVNVIKQADANTVTTVDNVE 300

Query: 301  AVLGEAQARDDWPNNLLVKTIWDESEDVKLMLNDLQNNILSAIILVVVVIIAILG-VRTS 359
              L  A     +P ++    + ++++ +   +  ++N  L A+ LVV+V+   LG  R  
Sbjct: 301  DRL--ADLAPSFPKDIKFTLVENQADYINDSIRGVRNTALEAMALVVLVLFVFLGNSRQV 358

Query: 360  LLVGVSIPGSFLTGLLVLAVFGLTVNIVVLFALIMAVGMLVDGAIVVTEFADR--RMQEG 417
            L++ +++P + L    ++ + G ++NI  L  L++A+G+L D +I+V E   R   + + 
Sbjct: 359  LIIAIALPFALLVNFFLMHLAGFSLNIFSLGGLVVAIGVLPDTSIIVVENISRLRSLHDK 418

Query: 418  MHRSEAYRDAAKRMAWPITASTATTLAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVM 477
             +      +A   +   I A+T T +A F P L  P +     K L L ++  +  + + 
Sbjct: 419  ANPQSISEEATLEVGGAIMAATVTFIALFVPFLLVPGLITLLFKELVLVILGLMIIAGLA 478

Query: 478  ALLFVPVLGSLFGRPQKVTQANQARMVALHNGDFSQAT--GITKAYYSTLAIAIRHPIKI 535
            A+   P+LG +      + +ANQ          FS+    G+  AY + L  A++  +  
Sbjct: 479  AITLTPMLGGV------LLKANQREFA------FSEKINHGLRWAYGALLHSALQFRLTT 526

Query: 536  LCGALLMSAAIAFAYGKAGLGAEFFPEVDPPFFSVKVRSYGDLSLNEKDRIMSDIEQVML 595
            +   + +  AI         G+EFFP VD     VK+R     +L   D I   +E +++
Sbjct: 527  IF--IFIGVAIGGVLLFKSAGSEFFPAVDDGRIVVKIRMPAGANLARMDAIAQQVEALVI 584

Query: 596  GHDEFESVYTRTGG------DDEIGV-----VQITPVDWQYRRSVKAIIEELEQVTDTF- 643
            G     SV+T +GG       ++IG      +++ P   +   + + I E   +V     
Sbjct: 585  GDQRVRSVFTLSGGAVRGLYTNKIGNEGEVDIELVPSSERKITTTEYIKELRPKVAKLLA 644

Query: 644  PGVEI---EYKFPDAGPPVEHDLEIEISARVADDLDKAAQQVRLWAEANPALTNL--SDN 698
            PG  +   + K        + ++E+EI+    D L   A ++       P LTN+  S +
Sbjct: 645  PGAILAVNQAKMRGIRSVGQAEIEVEINGSEVDTLFDVANKLAAKLAERPELTNVYVSLD 704

Query: 699  GSKPGIDWKIDIRRDDASRFAADATLVGNTVQFVTNGLKIGDYLPDDSDEEVDILVRYP- 757
             SKP  +W++DI R  A+        + + +    NG     Y   ++ E  DI +  P 
Sbjct: 705  SSKP--EWQVDIDRTLAAEHGLSTKEIAHVLNGYINGSVPTRYR--EASELYDIRIIMPE 760

Query: 758  SEYRDIGRFDQLRVKTAQG-LVPLTNFAQIIPEQKQDTIHRVDGRRVISVMADLKE-GYN 815
            S+ R     + + + T  G  V L + A++        I R +  + + V  D      N
Sbjct: 761  SQLRSRSDVENISIATPSGHYVRLKDVAKVTAATGPVEIIRKNQIKQVIVRCDPSATDLN 820

Query: 816  LALELPAIEQALRELNLPSSVEFRIRGQNEEQEHSAVFLEKAFMVALAAMAIILITQFNS 875
             A EL  +   L E   P+   + I G+  +       ++     A+    I+L  QFN+
Sbjct: 821  SAKEL--VTNILTETTWPTGYTYSIGGKALQMTQMQTTVQSILGYAVFFSFIVLAVQFNN 878

Query: 876  FYQAFLILTAVIFSTVGVFAGLLIFQKPFGIIMSGIGVIALAGIVVNNNIVLIDTYNQLL 935
                 +IL A  F   G+  GL    +PFG  +    +I LA  V+ + ++LI T  +  
Sbjct: 879  LRLPLVILFAAPFCLTGIGYGLFFASQPFGATVIIAAMIVLAANVI-DGVLLIQTAERQK 937

Query: 936  KRGLSREEAILRTGVQRLRPVLLTTVTTILGLLPMVLEMNIDIINQKIEFGAPSTQWWSQ 995
            ++G++  +A    G+ RLRP L+T +  +LG +P+ L                  +    
Sbjct: 938  QQGITLLKATFDAGLSRLRPRLMTVLPAVLGFMPLALAFE------------EGGELLRP 985

Query: 996  LATAVAGGLAFATVLTLVLTPCL 1018
            +A A  GGL     + L L P L
Sbjct: 986  MAAAAIGGLLLNVFVALFLVPVL 1008



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 80/359 (22%), Positives = 148/359 (41%), Gaps = 30/359 (8%)

Query: 157  IARQLRDKLESFRQILSVDIAGDREEIV-EIIVDPLLMESYGLDQSDIYNLIALNNRVVA 215
            +A +L  KL    ++ +V ++ D  +   ++ +D  L   +GL   +I ++  LN  +  
Sbjct: 682  VANKLAAKLAERPELTNVYVSLDSSKPEWQVDIDRTLAAEHGLSTKEIAHV--LNGYI-- 737

Query: 216  AGFVDTGYGRFS-------VKVPSVFESLKDVLELPIKVEGKQVITFGDVATVRKSFRDP 268
             G V T Y   S       +   S   S  DV  + I       +   DVA V  +    
Sbjct: 738  NGSVPTRYREASELYDIRIIMPESQLRSRSDVENISIATPSGHYVRLKDVAKVTAATGPV 797

Query: 269  ESFARLDGKPAIVLDIKKRSGENIIETVELVKAVLGEAQARDDWPNNLLVKTIWDESEDV 328
            E   +   K  IV      S  ++    ELV  +L E      WP      +I  ++  +
Sbjct: 798  EIIRKNQIKQVIVRC--DPSATDLNSAKELVTNILTETT----WPTGYTY-SIGGKALQM 850

Query: 329  KLMLNDLQNNILSAIILVVVVI-IAILGVRTSLLVGVSIPGSFLTGL-----LVLAVFGL 382
              M   +Q+ +  A+    +V+ +    +R  L++  + P   LTG+          FG 
Sbjct: 851  TQMQTTVQSILGYAVFFSFIVLAVQFNNLRLPLVILFAAPFC-LTGIGYGLFFASQPFGA 909

Query: 383  TVNIVVLFALIMAVGMLVDGAIVVTEFADRRMQEGMHRSEAYRDAAKRMAWPITASTATT 442
            TV   ++ A+I+    ++DG +++ + A+R+ Q+G+   +A  DA      P   +    
Sbjct: 910  TV---IIAAMIVLAANVIDGVLLI-QTAERQKQQGITLLKATFDAGLSRLRPRLMTVLPA 965

Query: 443  LAAFAPLLFWPDVTGEFMKYLPLTLMATLTASLVMALLFVPVLGSLFGRPQKVTQANQA 501
            +  F PL    +  GE ++ +    +  L  ++ +AL  VPVL +      + T  + A
Sbjct: 966  VLGFMPLALAFEEGGELLRPMAAAAIGGLLLNVFVALFLVPVLYTFMASTPEPTSIDVA 1024