Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 68.6 bits (166), Expect = 3e-16
 Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 17/292 (5%)

Query: 84  KIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALK 143
           ++  E++GRI  + I +G  V + Q +A +D+ D   QL  A+A+L+  + +      L 
Sbjct: 69  QLSFEVSGRIERILIDEGTRVRRGQTLAQLDRTDYRLQLREAEARLRQLEADLARKRTLL 128

Query: 144 NKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDP 203
            +G+    A     A    A+ +  + QR +D++ + APFDGVV     E    V +G P
Sbjct: 129 AEGILAPAAIEALQANTVAARVARDSAQRNIDHSTLTAPFDGVVARRLAEPDMVVAVGTP 188

Query: 204 VASIIDLHKLVIEADVSERHIQHV----QLEQAARIRFIDGTQTQGKVRYISRLSSP--A 257
           V  + D   + +  D+ E     +    +L+  A +   D    +  +RY    + P   
Sbjct: 189 VFEMQDNRHIEVSVDLPESAALSIPLGPELQAEAELVIAD---LRLPLRYKEHSTQPREG 245

Query: 258 TNTFAIEVEVDNPQQ-AIPAGVSAEVELSLMSQA-----AIKITPAMLALDEEGNLGVKT 311
             T+ + ++ + P+   +  G++  V L   +Q        ++  + L    +G   +  
Sbjct: 246 ARTYRLVLQGEPPEDFNLLPGMAMRVRLERPAQPETDNDGFRLPLSALQTGSDGKHFIWQ 305

Query: 312 LQGEHVKFVPIQLVKAEQDGVWLTG--LGEQVDIITRGQGFVRDGDKVLATQ 361
                 + + ++L + E D   + G  L  Q+ II  G   + D   + A +
Sbjct: 306 AADGRARRLAVELQQVEGDQALIRGDALQAQLPIIVAGGSKLHDDQPIEARE 357