Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 61/256 (23%), Positives = 120/256 (46%), Gaps = 4/256 (1%)

Query: 45  QTAMEIQVPLAKVGYQTFSATQTDKVIEL--YGRTAPDRQAKIGAEIAGRIAEVKIAKGQ 102
           Q   + Q P   +  +T  A + D    L   G     +   +  EIAG I +V+   G+
Sbjct: 29  QQIQQFQAPKPAIDVETELARRMDWQSRLPAIGTLRASQGIDLSVEIAGTITDVQFQSGE 88

Query: 103 MVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTD 162
            V+K Q I L+D     A L  A+A L + + EF  A +L ++       +    A    
Sbjct: 89  KVSKGQPIVLLDSEMERASLASAEADLNLSRVEFQRARSLLDRQAISRSEYDRLNAESQK 148

Query: 163 AQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSER 222
           A++S++ ++  L   ++ APF G +    ++ GD++  G P+A++ DL  L ++  ++E+
Sbjct: 149 AEASVAQLRASLAKKRILAPFAGTIGIRQVDVGDYIAAGTPIATLQDLSTLYVDFFLAEQ 208

Query: 223 HIQHVQLEQAARIRF--IDGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSA 280
           H+  + L Q  ++R       + +G +  ++      T    +  E+ NP   +  G+ A
Sbjct: 209 HVPLLALGQKVQLRVAAYPDQRFEGVITALNPKVETTTRNVQVRAELANPDGRLLPGMFA 268

Query: 281 EVELSLMSQAAIKITP 296
           ++++ L ++ A  + P
Sbjct: 269 DLQVLLPTETAQVVVP 284