Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., secretion protein HylD from Azospirillum brasilense Sp245

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 69/295 (23%), Positives = 119/295 (40%), Gaps = 54/295 (18%)

Query: 75  GRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKG-------DLDAQLERAKA 127
           GR    +  +  A + G + +V   +GQ VTK+ ++ +I++           A L RA+A
Sbjct: 53  GRVQAIQDFEARARVEGFVEQVAFQEGQNVTKDTLLYVIEQAPYQAAVDSAKADLARAQA 112

Query: 128 QLKVRQQEFNAASALKNKGL-------QGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVR 180
            L+  Q+ F  A  L+ +G        Q + A   A A +   Q+ L   +  L  T++ 
Sbjct: 113 TLREAQRAFQRAQELRTRGNISQADLDQAQAAQETADADIMQTQAKLRQAELNLGYTRIS 172

Query: 181 APFDGVVETLPIEKGDFVG-IGDPVASIIDLHKLVIEADVSERHIQHVQLEQ-------- 231
           +P DG +    +  GD V     P+A+++ L  + +   VS+R I  VQ           
Sbjct: 173 SPIDGRIGATAMTVGDLVNPSSGPLATVVQLDPIRVVFSVSDRDILEVQRAAPDLASADA 232

Query: 232 ----AARIRFIDGT--QTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELS 285
                  +R  DG+  + +GKV + S    P T T  +  +  NP+  +  G        
Sbjct: 233 VNRFVPALRLADGSEYEQKGKVSFASNRIDPQTGTIPVYADFANPKGFLLPG-------- 284

Query: 286 LMSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGVWLTGLGEQ 340
                 + I PA               Q E    VP+  ++ +Q G ++  L +Q
Sbjct: 285 --QYVTVLIRPA---------------QTERQPVVPVSAIQQDQQGSYVLVLDQQ 322