Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., transporter from Sinorhizobium meliloti 1021

 Score = 93.6 bits (231), Expect = 8e-24
 Identities = 76/326 (23%), Positives = 138/326 (42%), Gaps = 6/326 (1%)

Query: 35  GLGDSNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQAKIGAEIAGRIA 94
           G GDS   + + +   + PL  V      A   D+ +   G     R   +     G + 
Sbjct: 57  GSGDSERGQGRRSGFAEAPLVVVK-PAERAVVNDR-LNAIGNGEAIRSVTVTPTATGNLT 114

Query: 95  EVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFT 154
           E+ +  G  +T+ Q+IA +D  D     E+A+      +++      L        V   
Sbjct: 115 EILVKSGDRITEGQVIARLDSDDQMIAAEQARLTRDSAREKVERYRNLSTARAVTAVEVR 174

Query: 155 NAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLV 214
           ++  AL  A+ +L T +  L    + AP  GVV  + +  GD+V    P+A + D  +++
Sbjct: 175 DSEIALQAAELALKTAELDLKRRDIVAPSKGVVGIITVNIGDYVTTSTPIAVVDDRSQIL 234

Query: 215 IEADVSERHIQHVQLEQAARIRFI--DGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQ 272
           ++  V ER    + ++Q      I   G   QG V  I     P + T  +   ++NP  
Sbjct: 235 VDFWVPERFAGKISVDQPVTASAIAQPGRALQGVVHAIDNRLDPESRTLRVRARLENPDD 294

Query: 273 AIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGV 332
            + AG+S  V ++        + P  +    EG+  +  ++G+  + VPI++++   D V
Sbjct: 295 MLRAGMSFSVTVAFDGDRYPTVDPLAIQWSSEGSF-IWRVKGDKSERVPIKIIQRNPDKV 353

Query: 333 WLTG-LGEQVDIITRGQGFVRDGDKV 357
            +   L E   ++T G   +RDG  V
Sbjct: 354 LVDAELAEGDRVVTEGVQRLRDGGVV 379