Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 77.0 bits (188), Expect = 7e-19
 Identities = 71/334 (21%), Positives = 145/334 (43%), Gaps = 24/334 (7%)

Query: 47  AMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTK 106
           A +I+   A+V   T  +T+        G         +   + GRIA + + KGQ V  
Sbjct: 21  APDIEHTPARVAVYTIPSTENQVTRVFSGVARAQDLTALAFRVEGRIARIPVTKGQRVKA 80

Query: 107 NQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSS 166
             ++A+++K D    L   +A+L V +++   +  L ++ L  +  +    A    A++ 
Sbjct: 81  GDVLAVLEKNDFQIALNDRRARLDVTRKQAERSKTLVDQQLMAQAEYDQMNAEYLVARAE 140

Query: 167 LSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSE----- 221
               + +L+ T+++APFDG++  + ++  + V  G  V S+    ++ ++  V +     
Sbjct: 141 ARQAELMLEYTKLKAPFDGLIGDVFLKSFENVQPGTLVLSVHRTERIEVDVQVPDLLIAV 200

Query: 222 -RHIQHVQLEQAARIRF--IDGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQ-----QA 273
            R  +  Q +Q   + F         G +  ++    P ++T+   V V+ P+     + 
Sbjct: 201 SRRAETGQQKQGFDVAFEAFPDKSFIGHLLEVNTEKDPQSHTYVATVAVELPEGVKVLEG 260

Query: 274 IPAGVSAEV---------ELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFVPIQL 324
           +PA V+ ++         E  L   A +    + + L + G     +  G  VKF P++L
Sbjct: 261 MPAKVTVDLGKATYTYRREYLLPISAVVMRDGSDIDLQDAGVWLYDSATGT-VKFKPVRL 319

Query: 325 -VKAEQDGVWLTGLGEQVDIITRGQGFVRDGDKV 357
            V   Q    + GL +   ++T+G   + DG +V
Sbjct: 320 GVIVGQSIEVVDGLADGQQVVTQGASRLVDGQQV 353