Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score = 73.6 bits (179), Expect = 9e-18
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 26/239 (10%)

Query: 69  KVIELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKG-------DLDAQ 121
           +V+   GR        + + +AG++ E+   +G  V +  ++A +D           +A 
Sbjct: 87  RVVVANGRLRAAESVTVRSRVAGQLIELAFEEGARVARGAVLARLDPAIPASVVAQAEAA 146

Query: 122 LERAKAQLKVRQQEFNAASALKNKGLQGEV-------AFTNAAAALTDAQSSLSTVQRLL 174
           L   +++L   +++   ASAL+  G    V       A +  A  +   +++    +  L
Sbjct: 147 LSSRRSELDQAERDLGRASALQRSGAGSVVTRDDARFAVSRLARDIARLEAAAEEARARL 206

Query: 175 DNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAAR 234
           + T +RAPFDG++   P++ G  VG    + +++    L +E ++ E     + + Q AR
Sbjct: 207 EETVIRAPFDGIITERPVDGGQVVGTDTALYTLVATSALDVETEIDEALAVSLAVGQPAR 266

Query: 235 I-------RFIDGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSL 286
           +       R ID     G+V ++S    PAT    + V       AIP G S ++ + +
Sbjct: 267 MIPAGPEPRAID-----GRVLWVSPRVDPATGGRLVRVGFLGEPPAIPVGHSVDITIEV 320