Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., putative efflux transporter, RND family, MFP subunit from Phaeobacter inhibens DSM 17395

 Score =  145 bits (365), Expect = 3e-39
 Identities = 98/341 (28%), Positives = 155/341 (45%), Gaps = 43/341 (12%)

Query: 63  SATQTDKVIELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKG------ 116
           +A   D  + L G+T   RQ ++ +E    +    + KG  V    ++  +D G      
Sbjct: 84  TARGIDSAVVLRGQTQAIRQVEVRSETTSTVLSEPLRKGAQVKAGDLLCKLDPGTRPSTL 143

Query: 117 ---------------DLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALT 161
                          +  A+L+ ++A+LK  Q    AA+ L   G   E    ++ AA  
Sbjct: 144 LEAKARLSEAKIRVPEARARLDESRARLKEAQINLTAAAKLSEGGFASETRLASSQAAER 203

Query: 162 DAQSSLSTVQRLLDNTQ---------------------VRAPFDGVVETLPIEKGDFVGI 200
            A + ++T +  L+ T                      + APFDG++E+   E G  +  
Sbjct: 204 SAVAGVATAETGLETTSAGIEAASAQVAAAEKELARLDILAPFDGLLESDTAELGSLMQP 263

Query: 201 GDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQGKVRYISRLSSPATNT 260
           G   A++I L  + +   V E  +  V +   AR    +G   +GKV +ISR + P T T
Sbjct: 264 GSLCATVIQLETIKLVGYVPETEVNRVTIGAGARAELANGRNVEGKVTFISRSADPTTRT 323

Query: 261 FAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGE-HVKF 319
           F +E+ V NP  AI  G +A++ +S     A  +  + L L+ +G LGV+ ++ +  V F
Sbjct: 324 FEVEITVPNPDLAIRDGQTADIVISAEGSKAHYLPQSALTLNNDGQLGVRVVEDDMTVGF 383

Query: 320 VPIQLVKAEQDGVWLTGLGEQVDIITRGQGFVRDGDKVLAT 360
            PIQL++ E  GVWL GL EQ D+I  GQ FV  G  V  T
Sbjct: 384 YPIQLLRDEASGVWLGGLPEQADVIVVGQDFVVAGVSVAPT 424