Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 90.9 bits (224), Expect = 5e-23
 Identities = 74/303 (24%), Positives = 138/303 (45%), Gaps = 7/303 (2%)

Query: 57  VGYQTFSATQTDKVIELYGRTAP---DRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALI 113
           V  +T +  Q D V   Y  TA     ++A + + IAG I  +K+ +G  V+K Q++A+I
Sbjct: 36  VPVETTTVIQGD-VSSFYSTTATLEAPQEADVVSRIAGLIESIKVEEGDRVSKGQLLAVI 94

Query: 114 DKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRL 173
           D       L R++A++++ +QE N    + NK      +       L  A +        
Sbjct: 95  DAKRQRYDLARSQAEVEIIEQELNRLKKMSNKEFISADSMAKLEYNLQAAIAKRDLAALQ 154

Query: 174 LDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAA 233
           +  + VR+P DGVV    ++ G+     + +  +++  +L     + E  +Q ++L Q A
Sbjct: 155 VQESMVRSPIDGVVAKRYVKAGNMAKEFEQLFYVVNQDELYGIVHLPEAQLQSLRLGQEA 214

Query: 234 RIRFIDGTQ--TQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAA 291
            +     T+     KV  IS +  P + TF + + V N    + AG+   VEL   + + 
Sbjct: 215 ELYANKHTKDTIHAKVLRISPIVDPQSGTFKVTLSVPNQNAQLKAGMFTRVELRYDTHSN 274

Query: 292 IKITPAMLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGV-WLTGLGEQVDIITRGQGF 350
           +   P    ++++    +  +QG++     + L   E D V  ++GL     I+ RGQ  
Sbjct: 275 VITVPYNAVVNQDNQYALYVVQGDNALRREVALGYREADTVEVVSGLEPGEQIVIRGQQN 334

Query: 351 VRD 353
           ++D
Sbjct: 335 LKD 337