Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 89.7 bits (221), Expect = 1e-22
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 14/313 (4%)

Query: 52  VPLAKVGYQTFSATQTDKVIELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIA 111
           VP+A    +     Q    + L G+ A +R  +I AE++G++  + ++  Q V++ Q++ 
Sbjct: 64  VPIASARVEAHEVAQH---LSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLV 120

Query: 112 LIDKGDLDAQLERAKAQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQ 171
            ++     A L  AKA L   +++      L  +    +       A++  A++ L   Q
Sbjct: 121 HLEDAKAKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQ 180

Query: 172 RLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQ 231
             LD   ++APFDGV+  +    G  V +G  + S+ DL  + ++  + ER++  + L  
Sbjct: 181 ADLDYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSSMRLDLQIPERYLSQIYLGM 240

Query: 232 --AARIRFIDGTQTQGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAG--VSAEVELSLM 287
              A      G Q  G+V  ++   +  T    + V  DNP   +  G  +SA ++ + +
Sbjct: 241 PVVASSSAWPGEQFHGQVVAMAPRINSETLNLKVRVNFDNPSLQLRPGMLISARLDFAPV 300

Query: 288 SQAAIKITPAMLALDEEGNLG-VKTLQGEHV-KFVPIQLVKAEQDGVWL-TGLGEQVDII 344
           +QA + +     AL+  G    V  +  +++ +   + L     D V +  GL     I+
Sbjct: 301 TQAVVPVQ----ALEYSGTKRFVYVIDSDNIARRTQVTLGARIDDQVLIDDGLSLGDRIV 356

Query: 345 TRGQGFVRDGDKV 357
            +G   +RDG KV
Sbjct: 357 VKGLVNMRDGIKV 369