Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 67.0 bits (162), Expect = 9e-16
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 30/228 (13%)

Query: 24  FSFIILLALWLGLGDSNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQA 83
           F  +I+  L+  L  S  E P+   E ++P+  V      +      +  YG   P  + 
Sbjct: 16  FLILIVFGLFAALLMSTQEAPEQKEE-EMPVPIVDVMPVRSETVSLNLPSYGVVLPKNKT 74

Query: 84  KIGAEIAGRIAEV--KIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASA 141
           ++  E+ GR+  +  K   G +V +  ++A I+  D +A L +A+A L        A +A
Sbjct: 75  QLVTEVQGRMLTISDKFVAGGIVKRGDMLAQIEPSDYEADLMQAQATLA------QAKAA 128

Query: 142 LKNKGLQGEVA---------------------FTNAAAALTDAQSSLSTVQRLLDNTQVR 180
           L  +  +GEVA                          A +  A+++L+  QR L+ T +R
Sbjct: 129 LDEEIARGEVAKEDWKGYDGGVPPELGLRVPQLKKEQANVKFAEAALARAQRNLERTTIR 188

Query: 181 APFDGVVETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQ 228
           APFDG++++  ++ G +V +G  +  + D     I   ++   + +++
Sbjct: 189 APFDGIIKSRNVDLGQYVTLGTNLGELYDTRIAEIRLPLANHELAYLE 236



 Score = 23.9 bits (50), Expect = 0.008
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 79  PDRQAKIGAEIAGR----IAEVKIAKGQMVTKNQIIALI-DKGDLDAQLERAKAQLKVRQ 133
           PD Q  + AE+AGR      ++  ++G +   N+++ L+ +  D   +  + + QL ++ 
Sbjct: 241 PDTQVTLSAELAGRTVNWTGKIVRSEGVIDADNRMVYLVAEVKDPYLRQNKTEGQLPLKY 300

Query: 134 QEFNAASALKNKGLQGEV 151
             F   + +K + ++G V
Sbjct: 301 GSF-VNAIIKGRTVEGIV 317