Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 77.8 bits (190), Expect = 4e-19
 Identities = 80/358 (22%), Positives = 157/358 (43%), Gaps = 26/358 (7%)

Query: 18  QPWLISFSFIILLALWLGLGDSNAE-EPQTAMEIQV-PLAKVGYQTFSATQTDKVIELYG 75
           +P   S S ++L  +  G    +AE  P++   +++  + ++G  T  +           
Sbjct: 2   KPLTTSLSLLVLTLVLAGCSTESAEIAPESVRPVKLLEITELGSGTLRSFPA-------- 53

Query: 76  RTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQE 135
           + A  +QA++   ++G++ E  +  GQ VTK +++A +D  D   QL   +A  ++ Q +
Sbjct: 54  KVAATKQAELSFRLSGQLIEFSLVDGQRVTKGEVLARLDDRDARNQLLNREADHELAQAD 113

Query: 136 FNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKG 195
           FN    L  + L  +  +  A A L  + ++L++ Q  L  T ++APF G V    IE  
Sbjct: 114 FNRKGELLRQALISQAEYDLAKAQLKSSAANLASAQDQLSYTVIKAPFSGTVAKTKIENF 173

Query: 196 DFVGIGDPVASI-----IDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQ--GKVR 248
             V    PV  +     ID+   V E+  S     +        + F +  + Q   +++
Sbjct: 174 QIVQANQPVLVLQKDRFIDVVIQVPESLASRVTSFNPHSPSLPMVTFSNHPEQQYAARLK 233

Query: 249 YISRLSSPATNTFAIEVEVDNPQQ-AIPAGVSAEVELSL-----MSQAAIKITPAMLALD 302
             +   +P T ++ +   +  P + ++  G+SA++ L +       ++AI    A+L  D
Sbjct: 234 EFATQVTPGTQSYEVVFTLPTPTEFSVLPGMSAQLILDIAGPDAKKKSAIVPPSAVLKRD 293

Query: 303 EEGNLGVKT--LQGEHVKFVPIQLVKAEQDGVWLT-GLGEQVDIITRGQGFVRDGDKV 357
           ++G   V T  L    V    + L K    G+ +T GL     ++  G   + +  +V
Sbjct: 294 QDGEPIVWTYDLGTGQVSARKVSLGKVTSQGIEITQGLTVGDRVVVAGVAQLHESQQV 351