Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 87/341 (25%), Positives = 149/341 (43%), Gaps = 39/341 (11%)

Query: 38  DSNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQ--AKIGAEIAGRIAE 95
           D N      A++ Q+ LA VG    S T     + + GR   D Q  A+IGA + GR+ +
Sbjct: 47  DPNLVTAPEALQAQLKLAPVGSVPVSET-----LRVAGRLDFDEQRIARIGATVTGRVTQ 101

Query: 96  VKIAKGQMVTKNQIIALIDKGDL-DAQLERAKAQLKV--------RQQEFNAASALKNKG 146
           +    G  V   + +A+I+   L +AQL   KA  +         R Q   AA  +    
Sbjct: 102 ISGQLGHEVKAGEPLAIINSTVLGEAQLTFLKANARASLERNNVERAQHLFAADVIGKAE 161

Query: 147 LQ---GEVAFTNAAAALTDAQ-----------SSLSTVQRLLDNTQVRAPFDGVVETLPI 192
           LQ    E A T A     + Q           +SL++   +   T V A   G +    +
Sbjct: 162 LQRRESEAAVTQAERQAAEDQLRVLGMAPRDIASLASRGTINSLTPVVASIPGTLVERKV 221

Query: 193 EKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRF--IDGTQTQGKVRYI 250
            +G  V   D + ++ DL +L   ADV E+    V+  Q+  +    + G +  G++ YI
Sbjct: 222 TQGQVVEPADALFTVADLSRLWAVADVPEQQAALVRTGQSVELDIPSLAGEKLTGRLIYI 281

Query: 251 SRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGN--LG 308
           S   +P T T  +  EV+NP + +   + A + ++  +   + + PA   + E+ N  + 
Sbjct: 282 SDTLNPETRTVLVRTEVENPDRRLKPAMLATMLIAGKAMPKLAV-PAAAVVREDNNEHVF 340

Query: 309 VKTLQGEHVKFVPIQLVKAEQDGV--WLTGLGEQVDIITRG 347
           V+   G++ +  P+ ++ AE  GV    +GL E   ++  G
Sbjct: 341 VQVAPGQY-RLTPV-ILGAEAGGVRPVQSGLKEGEVVVVEG 379