Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score =  174 bits (441), Expect = 4e-48
 Identities = 96/341 (28%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 22  ISFSFIILLALWLGLGD---SNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTA 78
           +S   +I L +W+  G+   ++ E P+        L  V  +T SA   +  + L G+  
Sbjct: 31  LSLLIVIALVIWMATGEVKVASDEAPERQDSGDDQLTTVQVETLSARLHEPGLMLQGQLE 90

Query: 79  PDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNA 138
           P     + A++ GR+  + +  G+ V + Q +  I      A + R +++++  + +  A
Sbjct: 91  PWSSVMLSAQVPGRVESLAVGLGEQVREGQTLLTIADEGRSAAVLRWQSRVRKLEADLAA 150

Query: 139 ASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFV 198
           A  L+   L  E       + L  A + L++ ++ + +    APFDG +    ++ GD V
Sbjct: 151 ARRLRASNLAAESEVLALESELAAANAELTSARQAISHLTPEAPFDGTINRKSVDTGDLV 210

Query: 199 GIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQGKVRYISRLSSPAT 258
            +G P+  ++ + +L   A + ++ +  V   QA R+  +DG++  G V +++  +SP T
Sbjct: 211 QVGSPLFQLVRVDRLKATAQIPQQSVGDVATGQAVRVDLLDGSRLSGIVTFVASAASPET 270

Query: 259 NTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEH-V 317
            +FA+E+ V+NP +   AG SA + ++L    A+ I+PA L+L ++G  GVK + GE+ V
Sbjct: 271 RSFAVEIAVENPDRKRVAGGSASLRVALPEVKAMFISPAYLSLGDDGRPGVKYVNGENRV 330

Query: 318 KFVPIQLVKAEQDGVWLTGLGEQVDIITRGQGFVRDGDKVL 358
           +F  ++L+    DG W+TGL +++ +ITRG GFV  G++V+
Sbjct: 331 EFGEVKLLSVSTDGAWVTGLPDEIRLITRGGGFVSTGEQVV 371