Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 63/290 (21%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 70  VIELYGRTAP---DRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAK 126
           V   Y  TA     ++A + + IAG I  + + +G  V K Q +A+ID       L+R++
Sbjct: 48  VSSFYSTTATLEAPQEANVVSRIAGLIEVINVEEGDRVKKGQSLAIIDAKRQQYDLDRSE 107

Query: 127 AQLKVRQQEFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGV 186
           A++K+ +QE N    + NK      +       L  A +     +  +  + V +P DG+
Sbjct: 108 AEVKIIEQELNRLKKMNNKEFISADSMAKLEYNLQAAIARRDLAELQVKESHVVSPIDGI 167

Query: 187 VETLPIEKGDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQT--Q 244
           +    ++ G+       +  I++  +L     + E+ +  ++L Q A++     ++    
Sbjct: 168 IAKRYVKAGNMAKEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAIN 227

Query: 245 GKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEE 304
            KV  IS +  P + TF + + V N    + AG+   VEL   +   +   P    ++++
Sbjct: 228 AKVLRISPVVDPQSGTFKVTLAVPNQDARLKAGMFTRVELKYDTHENVITVPYSALINQD 287

Query: 305 GNLGVKTLQGEHVKFVPIQLVKAEQDGVWL-TGLGEQVDIITRGQGFVRD 353
               +  + G +     +++   E D V + +G+     ++TRGQ  ++D
Sbjct: 288 NKQALYVIAGTNANRREVEIGYREGDAVEIVSGIKPGEVVVTRGQQNLKD 337