Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 77.4 bits (189), Expect = 6e-19
 Identities = 81/343 (23%), Positives = 147/343 (42%), Gaps = 45/343 (13%)

Query: 55  AKVGYQTFSATQTDKVIELYGRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALID 114
           A V  +T       + + ++G+    R + + +  AG + EV +  G  V +   +A++D
Sbjct: 32  AAVVTETVEERALAETLPVFGQVVASRDSAVASRTAGIVDEVAVLVGDRVAEGATLAVLD 91

Query: 115 KGDLDAQLERA-------KAQLKVRQQEFNAASALKNK--GLQGEVAFTNAA-------- 157
                 +LE+A       +A + V + +   A   +++  GL+   +F++A         
Sbjct: 92  TELAQIELEQALADIAEARAGIAVAEAQLGRAEDARDRVEGLRNTASFSSARFDDAMSDL 151

Query: 158 -----------AALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVAS 206
                      A L +A+++    +  LD  ++ APF GVV ++  + G F+ +GDP+A 
Sbjct: 152 AAATGELNQARARLLNAEAAEQRARYTLDRARITAPFAGVVLSVAADPGQFISVGDPIAR 211

Query: 207 IIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQTQGKVRYISRLSSPATNTFAIEVE 266
           IID++ L IEA V  +    +      +     G Q   ++R I    S +T T  + + 
Sbjct: 212 IIDINALEIEAQVPSQFAPAIPPGVTVKGVSEAGQQLDLQIRAILPTESVSTRTRPVRLS 271

Query: 267 VDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFV------ 320
            D        G +  V  S+  Q  +    A LA+ ++    V+  QG  V FV      
Sbjct: 272 GD----LDALGATLAVGQSITLQVPVSAPRAALAVPKDAL--VQGAQGWTV-FVDADGIA 324

Query: 321 ---PIQLVKAEQDGV-WLTGLGEQVDIITRGQGFVRDGDKVLA 359
              P+++  A  D    L+GL E   ++ RG   +R G  + A
Sbjct: 325 EPRPVRIGVAMGDRFEVLSGLAEGDAVVVRGNERLRPGQALQA 367