Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., multidrug resistance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 73.6 bits (179), Expect = 8e-18
 Identities = 77/334 (23%), Positives = 143/334 (42%), Gaps = 32/334 (9%)

Query: 56  KVGYQTFSATQTDKVIEL-YGRTAPDRQ-AKIGAEIAGRIAEVKIAKGQMVTKNQIIALI 113
           K  Y       TDK +   Y  T   RQ   I  +++G I ++ + +GQ V + Q++ +I
Sbjct: 33  KSSYAVMQIEPTDKELSSSYSATIRGRQDIDIYPQVSGTIEKLCVTEGQKVRRGQLLFII 92

Query: 114 DKGDLDAQLERAKAQLKVRQQEFNAASAL--KNKGLQG------------EVAFTNAAAA 159
           D+    A L+ A A ++  +   + A      NK L              E ++  A A 
Sbjct: 93  DQVPYRAALKTATANVEAARAATSTAELTYKSNKELYAQKVVSEFSLKTAENSYLTAKAQ 152

Query: 160 LTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFV--GIGDPVASIIDLHKLVIEA 217
           L  A++   + +  L  T+V++P DGVV  LP   G  V   I  P+ ++ D   + +  
Sbjct: 153 LAQAEAQEISARNNLSYTEVKSPSDGVVGALPYRAGALVSANIPYPLTTVSDNSDMYVYF 212

Query: 218 DVSERHI-----QHVQLEQAAR------IRFIDGT--QTQGKVRYISRLSSPATNTFAIE 264
            ++E  +     Q+  +++A +      +   D +  Q +G +  IS +    T T    
Sbjct: 213 SMTENQLLALTRQYGDMDEALKNMPEVELILNDNSVYQKKGTIESISGVIDRQTGTVVAR 272

Query: 265 VEVDNPQQAIPAGVSAEVELSLMSQAAIKITPAMLALDEEGNLGVKTLQGEHVK-FVPIQ 323
           V   N  + + +G S  V +  + +  I I        ++  +  K + G+ V   + + 
Sbjct: 273 VVFPNESRLLHSGASGTVVVPSIYKNCIAIPQTATVRMQDKTIVYKVVDGKAVSTLITVA 332

Query: 324 LVKAEQDGVWLTGLGEQVDIITRGQGFVRDGDKV 357
            +   ++ V L GL    +I++ G G VR+G +V
Sbjct: 333 GINDGREYVVLDGLKAGDEIVSEGAGLVREGTQV 366