Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., putative membrane fusion protein precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 76.6 bits (187), Expect = 9e-19
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 5/213 (2%)

Query: 75  GRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQ 134
           G   PD +  +  E +G++ E+   +G  V K Q++A ++   L AQL+R  +QLK+ + 
Sbjct: 70  GVLLPDEEVDLSFETSGKVIEINFEEGTPVKKGQLLAKVNDRQLQAQLQRLVSQLKLAED 129

Query: 135 EFNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEK 194
                 AL  +    + A+      L    + +  V+  +  T++RAPFDG++    I  
Sbjct: 130 RVFRQDALLKRDAVSKEAYEQVKTDLATLNADIEIVKANIALTELRAPFDGIIGLRQISV 189

Query: 195 GDFVGIGDPVASIIDLHKLVIEADVSERHIQHVQLEQAARIRF-IDG--TQTQGKVRYIS 251
           G +      VA +  +  L +E  V ER+    Q+++   + F I+G       KV  + 
Sbjct: 190 GSYASPTTIVAKLTKITPLKVEFSVPERYAS--QIKKGTNLNFRIEGKLDAFSAKVYAVE 247

Query: 252 RLSSPATNTFAIEVEVDNPQQAIPAGVSAEVEL 284
               P  + F       N  +A+  G    ++L
Sbjct: 248 STIDPNLHQFTARALYPNTNRALLPGRYTSIQL 280