Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., component of multidrug efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 90/347 (25%), Positives = 153/347 (44%), Gaps = 35/347 (10%)

Query: 26  FIILLALWLGLGDSNAEEPQTAMEIQVPLAKVGYQTFSATQTDKVIELYGRTAPDRQAKI 85
           F + L    G G+    EP     ++V +A+      SA +    I       P ++ ++
Sbjct: 11  FCLCLLTSCGKGEKKTNEP-----VRVKVAEAEMLVPSAEREFSFI-----AKPFKETEL 60

Query: 86  GAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQEFNAASALKNK 145
              + G I   ++  G    +  IIA ID  D   + ERA+A     + EF     L  K
Sbjct: 61  SFRVGGPIDHFEVYAGNYYHRGDIIAEIDSRDFRIRKERAEAIYHQAKAEFERIKVLYEK 120

Query: 146 GLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKGDFVGIGDPVA 205
                 A+  A A  T A+++  T    L++T++ APFDG +  + IEK   V     V 
Sbjct: 121 NNLSASAYEKARADYTSAKTAYETAVNELEDTKLIAPFDGYIGEVYIEKYQDVKATQSVV 180

Query: 206 SIIDLHKLVIEADVSERHIQHVQLEQAARIRFIDGTQT--QGKVRYISRLSSPATNTFAI 263
           S ID+ +L IEA V++      +  +   IRF    +     KV  +S+ ++    +F +
Sbjct: 181 SFIDITQLKIEAYVTQEIAFQAKEIKEVGIRFDVRPEAVYPAKVVEVSKSTTRNNLSFLM 240

Query: 264 EVEVDNPQQAIPAGVSAEVELSLMSQAAI-KITPAMLALDEEGNLGVKTLQGEHVKFVPI 322
              + N Q   PAG+S ++ L L + +++  +T    AL+       +  +G++V  V  
Sbjct: 241 TALLPNKQGEWPAGISGKMLLDLPATSSVPMVTVPQTALNH------RPTEGDYVWMVDQ 294

Query: 323 ---QLVKAEQDGVWLTGLGEQVDIITRGQGFVRD----GDKVLATQL 362
              Q+VK +        LGE   ++  G+  V+D    GDKV  ++L
Sbjct: 295 TTGQVVKRK------VILGE---LLPNGKVEVKDGLQAGDKVAVSKL 332