Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., putative cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 74/314 (23%), Positives = 136/314 (43%), Gaps = 31/314 (9%)

Query: 75  GRTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQ 134
           G    ++   + A + G +  V  A G  V K Q++ +I+    + ++ +A+A+LK  Q 
Sbjct: 48  GYLTTEKTVNLVARVNGTLQSVSYAPGGRVKKGQLLFVIEPTLYNDKVAQAEAELKTAQA 107

Query: 135 EFNAA--------SALKNKG------LQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVR 180
           +   A         A+K+        LQ E + T   AA+++A+++LST +  L    VR
Sbjct: 108 QLEYARNNYSRMKEAVKSDAVSQIQVLQSESSVTEGVAAVSNAEAALSTARTNLGYCYVR 167

Query: 181 APFDGVVETLPIEKGDFVGIG-DPV--ASIIDLHKLVIEADVSERHIQHVQLEQAARIRF 237
           APFDG +    ++ G +VG    PV  A+I    ++    +V++     + +      + 
Sbjct: 168 APFDGTISKSTVDIGSYVGGSLQPVTLATIYKDDQMYAYFNVADNQWLEMSMNNQQPTKD 227

Query: 238 I----------DGTQT-QGKVRYISRLSSPATNTFAIEVEVDNPQQAIPAGVSAEVELSL 286
           +          +GT++    + Y+S      T T  +    DNPQ  + +G+   + L  
Sbjct: 228 LPKKIMVQLGKEGTESYPATLDYLSPNVDLNTGTLMVRANFDNPQGVLKSGLYVSITLPY 287

Query: 287 -MSQAAIKITPAMLALDEEGNLGVKTLQGEHVKFVPIQLVKAEQDGV--WLTGLGEQVDI 343
             +  AI +  A +  D+ G         + V +  I++ +   D +   L GL  Q   
Sbjct: 288 GEADHAILVKEASIGTDQLGKFLYAVNDSDIVHYRHIEIGQLINDTLRQVLGGLSPQERY 347

Query: 344 ITRGQGFVRDGDKV 357
           +T     VRDG K+
Sbjct: 348 VTEALMKVRDGMKI 361