Pairwise Alignments

Query, 366 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 79.3 bits (194), Expect = 1e-19
 Identities = 72/299 (24%), Positives = 141/299 (47%), Gaps = 18/299 (6%)

Query: 76  RTAPDRQAKIGAEIAGRIAEVKIAKGQMVTKNQIIALIDKGDLDAQLERAKAQLKVRQQE 135
           R + + +A++   I+G + ++ + +GQ + +  ++A +D  D    L   +A+ ++   +
Sbjct: 54  RVSANSRAELSFRISGELTDLALVEGQQIRQGSLLAKLDDRDAYNNLMTREAEHELLAAD 113

Query: 136 FNAASALKNKGLQGEVAFTNAAAALTDAQSSLSTVQRLLDNTQVRAPFDGVVETLPIEKG 195
           F   + L  + L  +  F +A A L  A+++L+  +  L  T++ APF G V    ++  
Sbjct: 114 FQRKTELLKRKLISQAEFDSAQAQLKSAKAALAAARDQLSYTKLIAPFSGTVAKRLVDNH 173

Query: 196 DFVGIGDPVA-----SIIDLHKLVIEADVSERHIQHVQLEQAARIRF--IDGTQTQGKVR 248
             V     +      S++D+   V EA  +  +    Q    A++RF  + G +   K +
Sbjct: 174 QIVQANQGILTLQNNSLLDVSIQVPEAMAASLNNYIQQQNFTAKVRFSALAGMEFDAKFK 233

Query: 249 YISRLSSPATNTFAIEVEVDNPQ--QAIPAGVSAEVELSLM---SQAAIKITP--AMLAL 301
             S   +P T  + +   +  P+  Q +P G+SAE+ L+L+    Q A  I P  A+   
Sbjct: 234 EYSTQVTPGTQAYEVVFSLPQPKDIQLLP-GMSAELTLALVKTPDQTASAIVPVTAIDKR 292

Query: 302 DEEGNLGVKTLQGE--HVKFVPIQLVKAEQDGV-WLTGLGEQVDIITRGQGFVRDGDKV 357
           D++G + V   Q +   VK   + L +   +G+  L G+ +   I++ G   + DG KV
Sbjct: 293 DQDGQVQVWVYQAQSGEVKPTAVTLGRVTTEGIEVLGGINKGDLIVSAGVSQLSDGMKV 351