Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., Putative membrane protein from Pseudomonas fluorescens FW300-N1B4

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 72/342 (21%), Positives = 152/342 (44%), Gaps = 23/342 (6%)

Query: 12  RVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVV 71
           R  V+A+L   + C+ +  P+++ ++ + I+++ ++P+   F+ KL + + L A L  +V
Sbjct: 21  RAGVIAVLV--MFCFQIFSPFLDLMLWSVILAITLYPLQVRFKSKLGNKDGLTATLIVLV 78

Query: 72  LTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHP-------WVVKGLSLAN 124
           +  I+++P+  +       G+  + ++   +T     +    P       W + G  + N
Sbjct: 79  VISILMVPIYLL-------GASIADSVEKVMTMVKTDSFHIPPPSDAVASWPLVGEPIYN 131

Query: 125 HYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDH 184
            +      +   +     +F        +S+ +K+ G     ++    ++    FL    
Sbjct: 132 LWAQ----ATTDLPDLAHKFMPQIKGVSLSLLSKLAGVGMGLLLFIVALIVAGIFLAYGE 187

Query: 185 DKIISAIRHILPLSRSQEDRLLSEIENVSKSAV-MGSFLTAIAQGVAGGIGMWLAGFPGL 243
               SA++ +   S       ++++   +  AV +G    A  Q +  GIG    G PG 
Sbjct: 188 SGHRSAVQIVTRFSGPINGPKIADLCTATIRAVALGVVGIAFIQMLLVGIGFVFMGVPGA 247

Query: 244 FWGTMMGFASFIPVVGTALIWIPATLYLFLT-GDTTWAIFLAIWSVAVVGSIDNLLRPFL 302
               +      I  +   LI +P  +++F++ G +T  I  AI+ V + G +DN+L+P L
Sbjct: 248 GLLALAVLLLGIMQLPATLITLPVIVFVFMSEGASTATIVFAIY-VFIAGLVDNVLKPLL 306

Query: 303 MQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLF 344
           +     +   ++    LGG+   G++GL  GP+I A+   LF
Sbjct: 307 LGRGVDVPMPVVLIGALGGMVTGGILGLFIGPVILAVGYQLF 348