Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Predicted permease from Pseudomonas stutzeri RCH2

 Score =  118 bits (296), Expect = 2e-31
 Identities = 95/341 (27%), Positives = 163/341 (47%), Gaps = 25/341 (7%)

Query: 12  RVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVV 71
           ++L++ LLA   AC W++ P+ +++  A +++   +P+     + L  +  LAA L    
Sbjct: 10  QILLLGLLA---ACLWVLAPFASALFWAAVLAFASWPVMRLLTRWLDGNATLAAGLLTFS 66

Query: 72  LTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEE 131
             V++ +PL+++   I  Q  + +  L+    +G   A     W+ +   + +  + F +
Sbjct: 67  WMVLVAVPLVWLGFNIADQIREANALLHDLQVEGLPPA---PTWLGELPLIGDTLVGFWD 123

Query: 132 ISPQQ-------IAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDH 184
              +Q       I   IGQ A      L+  SA+I G     ++   L L ++FF  RD 
Sbjct: 124 TVDEQGTALIASIRPYIGQVANW----LLVRSARIGGG----MLELALSLVLVFFFYRDG 175

Query: 185 DKIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGL 243
            ++ + +  +L  L   + D  L  +    +  V G   TA AQ +   IG  +AG PG 
Sbjct: 176 PRLSAFVHSLLHRLIGDRADHYLELVAGTVQRVVNGVIGTAAAQAILAYIGFLIAGIPGA 235

Query: 244 FWGTMMGFA-SFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFL 302
               ++ FA SFI V    LIW PA  +L   GD   AIFL IW + V+  +DN+L+P+L
Sbjct: 236 LVLGLLTFACSFIMV--PPLIWGPAVAWLAWQGDYGMAIFLGIWGMFVISGVDNVLKPYL 293

Query: 303 MQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVL 343
           +     +  +++   + GGI  FG +GL  GP + A+   L
Sbjct: 294 ISRGGNLPLVVVLLGVFGGILAFGFMGLFLGPTLLAVAYSL 334