Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., Predicted permease from Pseudomonas stutzeri RCH2

 Score =  194 bits (494), Expect = 2e-54
 Identities = 105/352 (29%), Positives = 191/352 (54%), Gaps = 5/352 (1%)

Query: 12  RVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVV 71
           +V +  L+  +LA  W++ P+  ++  A I++++  P+  +  ++L    NLAAF++ +V
Sbjct: 9   KVFLALLVVVSLAFGWILLPFYGAVFWAVILAIIFAPLQRYLHRRLNQRRNLAAFVTLLV 68

Query: 72  LTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEE 131
             ++ V+P++   G +VQ+G+   + + +     G         + + + L      F +
Sbjct: 69  CLLVAVLPVILTTGMLVQEGATLYKQIESGELDIGSWVARLRDLLPQSVQLQLQRFGFGD 128

Query: 132 ISPQQIAQRIGQFATTFGSNLVSISAKILGDAT-SFVMHFFLMLFVLFFLLRDHDKIISA 190
           +  + + +R+   A   GS  ++  A   G  T  F++ FF+ML++LFF +RD  ++++ 
Sbjct: 129 L--ESMRERLASGALE-GSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVAR 185

Query: 191 IRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPG-LFWGTMM 249
           IR  +PLS +Q+ RL ++   V ++ V G+ + AI QG  GGI   + G  G L WG +M
Sbjct: 186 IRKAIPLSDAQKRRLFNKFTRVVRATVKGNIVVAITQGALGGIIFAVLGISGALLWGVLM 245

Query: 250 GFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQGSAGM 309
            F S +P VG  LIW P  +Y  +TG     + L ++ + V+G +DN+LRP L+     M
Sbjct: 246 AFLSLLPAVGAGLIWTPVAIYFLMTGAIWQGVVLTLYGILVIGLVDNILRPILVGKDTKM 305

Query: 310 NTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361
              ++  S LGG+ LFGL G + GPL+ A+ +  + ++     S + Q DR+
Sbjct: 306 PDYVVLISTLGGLALFGLNGFVIGPLVAALFISTWGLFTSPEESDMAQLDRA 357