Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 67.4 bits (163), Expect = 6e-16
 Identities = 74/356 (20%), Positives = 160/356 (44%), Gaps = 32/356 (8%)

Query: 14  LVVALLASALACYW---LVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCV 70
           L++ LL  AL  Y+   L+ P + ++++AF   LL +P+      K+  +    A L   
Sbjct: 21  LMLILLGIALIIYFAGGLLAPLLVALVLAF---LLEWPVAQMV--KIGINRTTGASL--- 72

Query: 71  VLTVIIVIPLLFIFG---AIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYL 127
           VL + + + LL  FG   +I +QG     +L   + +G I         +KG      Y 
Sbjct: 73  VLVLFVGVMLLITFGLVPSIWRQGVALVTDLPTMLDKGFI--------TLKGF--VEQYP 122

Query: 128 PFEEISPQQIAQRIGQFATTFGS-NLVSISAKILGDATSFVM---HFFLMLFVLFFLLRD 183
            F  +S +Q+   +G+      + +++ +  +++G + S ++   +  L+  ++FF L+D
Sbjct: 123 QF--LSVEQLDASVGELKKLLDTQHILDLGKQLIGYSASLLVLMVYAILVPLLVFFFLKD 180

Query: 184 HDKIISAIRHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFP-G 242
            D+++   +  +P +R    ++  E+     + + G  +  +  G A  I   +      
Sbjct: 181 KDELVRGSKRFIPANRDLARKVWLEMNQQIFNYIRGKVIEIVIIGAASYIFFAIMDLRYA 240

Query: 243 LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSID-NLLRPF 301
              G + GF+  IP VG  L+ +P  L  F     +      +    ++ ++D NLL P 
Sbjct: 241 ALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQALDGNLLVPI 300

Query: 302 LMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQ 357
           L   +  ++ + I  ++L    L+G+ G+ +   + ++   + N + +  +  L++
Sbjct: 301 LFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVVNAWPKADKPELEK 356