Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 74/340 (21%), Positives = 148/340 (43%), Gaps = 15/340 (4%)

Query: 9   SSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLS 68
           S+ R+ ++A+L   +  Y +V P+I   +   II++ + P+    E+ L     LAA L 
Sbjct: 20  SAIRIGLLAILV--IWTYDIVRPFIVPALWGAIIAVALMPLTHRLERMLKGRRGLAATLI 77

Query: 69  CVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLP 128
            +V   ++V P + + G+I +  S   +     V Q G   L      V  + +    L 
Sbjct: 78  ALVGIALLVTPFVVVSGSIFEGVSNTLK-----VLQSGEIHLPEPTQRVAEIPIIGERL- 131

Query: 129 FEEISPQQIAQRIGQFATTFGSNL---VSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185
           FE      IA  + +    F   +    S  A ++G + + ++ F + L +    + + +
Sbjct: 132 FEVW--HNIASNLEKAILHFLPEIKAGFSALAGVIGSSLATLVMFIISLLIAAGFMANSE 189

Query: 186 KIISAIRHILPLSRSQEDRLLSEIENVS-KSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244
           +  +A+  +   +        + +   + +S ++G    A  Q +  G  +++ G P   
Sbjct: 190 QCAAAMSKVAVRAVGPNAHAWTSLTAATIRSVLLGVVGVAFIQAMLIGSALFVFGLPAAG 249

Query: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304
             T++     I  +   +I +P   Y + + + T A   ++W + + G  DN+L+P LM 
Sbjct: 250 LLTLVALFLGIAQLPALIIVLPLIGYAYSSMEGTSATIFSVW-IFLGGISDNILKPMLMG 308

Query: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLF 344
               +   +I    +GG+   G+IGL  G ++ AI   LF
Sbjct: 309 RGVDVPMPVILIGAIGGMLFAGIIGLFLGAVVLAIWYELF 348