Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 80/340 (23%), Positives = 151/340 (44%), Gaps = 45/340 (13%)

Query: 15  VVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCVVLTV 74
           VV +LA   A   +V P++ S  +A I +  +          L +   +  +L+ ++L  
Sbjct: 20  VVIILAGIKAASPIVVPFVLSCFIAVICNPAI---------GLMTKYRVPKWLAVILLMC 70

Query: 75  IIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFEEISP 134
            IV+  L++   +    ++FS+ L     Q   Q +    WV+  L   N      +IS 
Sbjct: 71  FIVLMGLWLASLVGSSINEFSKQL----PQYRNQLVEQFSWVLHKLQALNI-----QISK 121

Query: 135 QQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHDKIISAIRHI 194
           +Q+       A       +S++  +L    + + + FL++  + F+L +     S++   
Sbjct: 122 EQV------LAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFE----ASSLPKK 171

Query: 195 LPLSRSQEDRLLSEIENVSKSA---VMGSFLTAIAQGVAGGIGMWLAGFP-GLFWGTMMG 250
           L L+    D  L +I+   +S    ++   L ++A G+  G+G+   G    L W  +  
Sbjct: 172 LHLALDDPDMRLQQIDRFLQSVNQYMVIKTLVSLATGLIVGVGLAFIGVDYALLWAVIAF 231

Query: 251 FASFIPVVGTALIWIPATLYLFL------TGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304
             ++IP +G+ +  IPA L  F+       G TT    L I +  V+G   N++ P  M 
Sbjct: 232 LFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTT---MLYIGANMVMG---NVVEPKFMG 285

Query: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYG-PLIFAITMVL 343
              G++TL++F SL+    L G +G++   PL   + + L
Sbjct: 286 RGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIAL 325