Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (295), Expect = 3e-31
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 23/354 (6%)

Query: 1   MSEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSH 60
           M++ I  A+  R L++ LL + +  ++ ++ ++   + A II    +P++     K    
Sbjct: 1   MAQIISNAAVGRTLLILLLCAGV--FFFID-FLVPALAALIICFSSWPLYKKLLVKCGGR 57

Query: 61  NNLAAFLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALF--NHPWVVK 118
           + +AA ++ V++ + ++ PL+F+F   +Q+   +++ L      G    L+  + PWV +
Sbjct: 58  SAVAASIALVLIVLGLITPLIFVFSYALQEIRIWAEWLVYANQHGAPVPLWIKDLPWVGE 117

Query: 119 GLSLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILG---DATSFVMHFFLMLF 175
            L+L       E   P ++ Q +   +   G NL  IS  +L    +    ++    ML 
Sbjct: 118 WLTLQWQQFIGE---PHELGQIVSAIS---GQNLTGISRWVLQLGWNTLGLLLTLLFMLI 171

Query: 176 VLFFLLRDHDKIISAI----RHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAG 231
            LFFL +D + +   +      ILP    +  R+   +     S V+G  L AI +G+  
Sbjct: 172 TLFFLYKDGESVAKQVDVVGERILPARWYRFSRV---VPATVSSTVIGMTLIAIGEGIVL 228

Query: 232 GIGMWLAGFPG-LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAV 290
           GI  W+AG P  + +G +  F + IP  G   ++   +LYL  TGD T  + L +W    
Sbjct: 229 GIAYWIAGVPSAVAFGVLTAFMALIPG-GAPTMFTLISLYLVGTGDMTAGVGLFLWGSIE 287

Query: 291 VGSIDNLLRPFLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLF 344
           +  +D  LRP L+ G   +  L  FF L+GG++  G +GL  GP++ A+ + ++
Sbjct: 288 LFIVDKTLRPNLVGGPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIW 341