Pairwise Alignments

Query, 361 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  116 bits (290), Expect = 1e-30
 Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 23/354 (6%)

Query: 1   MSEKIKLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSH 60
           M++ I  A+  R L++ LL + +  ++ ++ ++   + A I+    +P++     K    
Sbjct: 1   MAQIISNAAVGRTLLILLLCAGV--FFFID-FLVPALAALIVCFSSWPLYQKLMAKCGGR 57

Query: 61  NNLAAFLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALF--NHPWVVK 118
           + L+A ++ V++ V ++ PL+F+F   +Q+   + + L      G    L+  + PW+ +
Sbjct: 58  SALSATIALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGE 117

Query: 119 GLSLANHYLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILG---DATSFVMHFFLMLF 175
            L+L       E   P ++ + +   +   G NL  IS  +L    +    ++    ML 
Sbjct: 118 WLTLQWQQFIGE---PHELGKIVSAIS---GQNLSGISRWVLQLGWNTLGLLLTLLFMLI 171

Query: 176 VLFFLLRDHDKIISAI----RHILPLSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAG 231
            LFFL +D + +   +      ILP    +  R+   +     S V+G  L AI +G+  
Sbjct: 172 TLFFLYKDGESVAKQLDIVGERILPARWHRFSRV---VPATVSSTVIGMTLIAIGEGIVL 228

Query: 232 GIGMWLAGFPG-LFWGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAV 290
           GI  W+AG P  + +G +  F + +P  G   ++   +LYL  TGD T  + L +W    
Sbjct: 229 GIAYWIAGVPSAVAFGVLTAFMALVPG-GAPTMFTLISLYLVGTGDMTAGVGLFLWGSIE 287

Query: 291 VGSIDNLLRPFLMQGSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLF 344
           +  +D  LRP L+ G   +  L  FF L+GG++  G +GL  GP++ A+ + ++
Sbjct: 288 LFIVDKTLRPNLVGGPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIW 341