Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Xanthomonas campestris pv. campestris strain 8004

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 13/269 (4%)

Query: 79  LILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAYGPIHKYDSAR 138
           ++L+  P+ ++EA  L A  +A    G  +V    N  G +S E        +    +  
Sbjct: 83  MVLVLPPRQREEARALFARAVALTARGGCVVACQSNNEGARSGEADLRQLTGLAGSLTKH 142

Query: 139 RCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIR--SLPGVFSHGEFDLGSRLLLDT 196
            C  YW   +  P + D     +  A+D     L  R  S PGVF+    D  S LL++ 
Sbjct: 143 HCRTYWSGPL--PGSTDAALQARWAALDAPRKILDGRFVSRPGVFAWDRIDPASALLVEH 200

Query: 197 LPP-LSGKVIDIGSGAGVLGC-VMAKLNPHIELEMTDISALAIRSSQETLVAN----QLH 250
           LP  L+G   D+G+G G L   V+A+      L++ +  A A+  ++  L  +    QLH
Sbjct: 201 LPTTLAGHGADLGAGFGYLSAEVLARCPKVTALDVYEAEARALNLARRNLQGSAHPAQLH 260

Query: 251 GHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSY-SATERLLAESVDHLASGGSIWVVANS 309
            H    D+ +     Y++IV+NPPFH+          +R +A +   L  GG + +VAN 
Sbjct: 261 YHW--RDVTAGLVAQYDFIVSNPPFHTPSRADRPDIGQRFIAVAAQALRPGGQLLLVANR 318

Query: 310 FLKYPPILEQAFGHCDIAAKTNKFAIYHA 338
            L Y  +L  +FG   +AA+ + F +  A
Sbjct: 319 HLPYEQVLNDSFGQVRVAAERDGFKLIAA 347