Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC from Rahnella sp. WP5

 Score =  245 bits (625), Expect = 1e-69
 Identities = 137/343 (39%), Positives = 202/343 (58%), Gaps = 14/343 (4%)

Query: 1   MQPYTAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAY 60
           M   T  SE+ LR  + F  + VL AG+++D  P E+      V V T  Y ++  L   
Sbjct: 1   MSALTPASEVILRHSEEFEGRRVLFAGDLQDSLPAEID--AEEVRVHTNMYHHWQMLSKA 58

Query: 61  PEITRYFGEQLTADLN----ADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRS 116
                 FG  L AD       D+++ YWPK+K EA++ L  LL+ L  G ++ V+GENRS
Sbjct: 59  LGDNVQFG--LVADAEFITPCDVLVYYWPKSKLEAKFQLFNLLSHLPVGIDVFVIGENRS 116

Query: 117 GVKSIEKMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRS 176
           GV+S E        + K DSARRC  Y G     P  FD + W+  Y V+    E+TI++
Sbjct: 117 GVRSAETTLEGLCELSKVDSARRCGLYHGRLEKQPE-FDADGWWDQYMVE----EVTIKT 171

Query: 177 LPGVFSHGEFDLGSRLLLDTLP-PLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISAL 235
           LPGVFS    D GS LL+++   P+ GKV+D+  GAGVL  V+A  +P +++ ++D+SA 
Sbjct: 172 LPGVFSREGLDSGSLLLINSFEEPVKGKVLDVACGAGVLASVLAMYSPKMKITLSDVSAA 231

Query: 236 AIRSSQETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVD 295
           AI +S+ TL AN L G V  S+++SD    ++ I++NPPFH GL+TS +A E+L+  +V 
Sbjct: 232 AIEASRATLAANDLPGEVIASNVYSDIAGRFDMIISNPPFHEGLQTSLTAAEQLIRGAVS 291

Query: 296 HLASGGSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHA 338
           HL  GG + +VAN+FL Y  +L+ AFG  ++ A+  +F +Y A
Sbjct: 292 HLNIGGELRIVANAFLPYAALLDDAFGSHEVLAQNGRFKVYRA 334