Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., rRNA (guanine-N(2)-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  217 bits (552), Expect = 4e-61
 Identities = 122/338 (36%), Positives = 185/338 (54%), Gaps = 5/338 (1%)

Query: 7   PSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQLKAYPE--IT 64
           PS++ LR ++ F  K+VL+     D     L +  A V+     + ++ ++K++    + 
Sbjct: 5   PSQVVLRNIELFESKNVLLINHECDLLATALLEDAAKVTTLALDFNHFQRIKSHENARLQ 64

Query: 65  RYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKM 124
            +FG QL +    D ++L++PK+K  A YLL +    L  G E+V+VGE + G++SI K 
Sbjct: 65  CHFGHQLPSTQTFDAVVLFYPKSKSLAPYLLNLAGRHLIPGGELVIVGEKKGGIRSITKQ 124

Query: 125 FAAY--GPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFS 182
              Y  G I K D+AR C  Y    +       +  W K Y +     ELTI +L GVFS
Sbjct: 125 LPDYFDGGI-KLDNARHCMLYSSSLLSEAPEIKLSDWVKDYVLSTPQGELTICNLVGVFS 183

Query: 183 HGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQE 242
               D G+ LLL+ LP L G+V+D G GAGV+   + K NP +ELE  DI+A+A+ S + 
Sbjct: 184 EKRLDEGTELLLEHLPTLKGRVLDFGCGAGVITAALLKANPDLELECVDINAMALASCEL 243

Query: 243 TLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGS 302
           TL AN +   VY SD  + T   ++ I++NPPFH GL+++     R + ES   L SGG 
Sbjct: 244 TLAANGMQAKVYASDGLTQTQGMFDAIISNPPFHDGLDSTTEIATRFVQESEAQLKSGGI 303

Query: 303 IWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340
             +VAN  L Y   + + F   ++AA+ NK+ IY  +K
Sbjct: 304 FQIVANRHLPYSDTIAKFFKTVNVAAENNKYKIYANRK 341