Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 20/287 (6%)

Query: 65  RYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKM 124
           ++F  + T   +  L+L+  PK      + L  L   L  G  ++V  + +S   S+  +
Sbjct: 100 QWFTSRDTLPKDVALVLMKLPKNLTYFAHQLMRLSQILPAGCRVLVGAKAKSINSSLLAL 159

Query: 125 FAAY-GPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHE--LTIRSLPGVF 181
           FA + GP +        S  W          D +       + +   E  LTI +L  VF
Sbjct: 160 FAKHLGPAN-------ASLAWKKTRVITCISDGKPRALPNGITWNIPEFNLTISNLSNVF 212

Query: 182 SHGEFDLGSRLLLDTLPPLSGK---VIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIR 238
           +  + D+G+R++LD LP   GK   V+D+G G GVLG   A+L P+ ++   D S +A+ 
Sbjct: 213 AANKLDIGARIMLDNLP--QGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVA 270

Query: 239 SSQETLVANQL---HGHVYPSDMFSDTGHHY--NYIVTNPPFHSGLETSYSATERLLAES 293
           S++     NQL    GH +  D  +        + ++ NPPFH G   +     ++  ++
Sbjct: 271 SAKANWTMNQLAEGKGHFHWDDCMTHLPEDIEPDLVLCNPPFHQGEAITDHIAWQMFLDA 330

Query: 294 VDHLASGGSIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340
              L +GG + +V N  L Y   L++ F +C   A   KF I  A+K
Sbjct: 331 RRRLKNGGILHIVGNRHLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377



 Score = 23.5 bits (49), Expect = 0.009
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 207 IGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVANQL 249
           I    G L C ++++NP+  L +   +  +   +++    NQL
Sbjct: 52  INDSFGALSCALSRINPNWPLRVETDARTSFLGTEQNHHRNQL 94