Pairwise Alignments

Query, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  203 bits (516), Expect = 6e-57
 Identities = 115/336 (34%), Positives = 174/336 (51%), Gaps = 3/336 (0%)

Query: 5   TAPSEIALRQLDYFADKHVLVAGEVEDRFPIELRQYCASVSVFTTHYGYYSQL--KAYPE 62
           T PS++ +R  +  +   VLV     D  P  L    +SV      Y +Y  L  +A  +
Sbjct: 14  TNPSQVIIRNQETLSQHKVLVLNHEADLLPKALLDVASSVDALALDYHHYLHLAPQANNK 73

Query: 63  ITRYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIE 122
           +  YFG QL      + +++Y+PKAK  A YL  +    L    +++VVGEN+ G+KS+ 
Sbjct: 74  LRCYFGHQLPHQNKYNTVIVYFPKAKPLAPYLFNLAAQHLVPNGQLLVVGENKGGIKSLV 133

Query: 123 KMFAAYGPIH-KYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVF 181
           K+   Y     K D+AR    +    + T     +  W   Y +      +TI +L GVF
Sbjct: 134 KLLPNYFAAGVKLDNARHSLLFGSSLIDTAPEITLSDWASQYQLSTPQGNITICNLVGVF 193

Query: 182 SHGEFDLGSRLLLDTLPPLSGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQ 241
           S    D G+ LLL  LP LSG+V+D G GAGV+   + K  P + LE  DI+A+A+ S +
Sbjct: 194 SEKHLDQGTELLLSHLPTLSGRVLDFGCGAGVIAATLLKAQPTLSLECIDINAMALASCE 253

Query: 242 ETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGG 301
            TL AN +   VYPSD  + T   ++ I++NPPFH GL ++ +  +R +A+S   L S G
Sbjct: 254 LTLAANGMMAKVYPSDGLAQTSGKFDGIISNPPFHDGLASTTNIAQRFVADSAKQLQSKG 313

Query: 302 SIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYH 337
              +VAN  L Y   +   FG   + A+ NK+ +Y+
Sbjct: 314 IWQIVANRHLPYSDTIAAEFGQLTVPAENNKYKLYY 349