Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., sensor histidine kinase from Pseudomonas fluorescens FW300-N2E2

 Score =  220 bits (561), Expect = 5e-61
 Identities = 167/600 (27%), Positives = 288/600 (48%), Gaps = 63/600 (10%)

Query: 358  VFAMLTAIVLVVIASHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLA-- 415
            + A   AI+L    +   S F+  P++ L     R++AGDL+  + + ER DEIG +   
Sbjct: 426  IVAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLNAEIASAERGDEIGIMTRA 485

Query: 416  -----------------VSFERMQ------RSIREKISLIKSQNKELESNLLIIRKQNDE 452
                                ER Q      R + E+   +  Q + LE+  + + +  ++
Sbjct: 486  VRVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDALHHQTEVLEAQAIELIQARNQ 545

Query: 453  LQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLA 512
             + AN+ K +F+AT SHELRTPL  ++   E L +    P  A    Q+D    +  RL 
Sbjct: 546  AETANQAKSDFVATVSHELRTPLTLILAPLEQLRAATTPP--ADWHVQVDRAQRNALRLM 603

Query: 513  TLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVS 572
              V+D+LD+ K   G  ++    VDL+    ++ E +  +   K   +   +      V 
Sbjct: 604  NRVNDILDFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMVAEGKGCTLTCSIDPALGTVF 663

Query: 573  ADPQRLEQVLYNLIGNAIKYTSEGKIV-ISATYID-DKVRVQVVDTGQGIPAEQLEHIFE 630
             DP+  E++L NL+ NAIK+T  G  V ++   ID ++  + V D+G GI  ++L  +F+
Sbjct: 664  LDPRHFEKILLNLVSNAIKFTPAGGTVHVAVAAIDGERFELAVQDSGIGIAPDKLPLLFQ 723

Query: 631  PLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEE--- 687
               Q  + A+R+  G G+GL++ + L++LM G + V+S+P  G+ F   LPL +E++   
Sbjct: 724  RFSQIDNSATRHYSGTGIGLALVKDLVKLMGGEVGVNSEPGRGSCFFVRLPLGAEQDTVP 783

Query: 688  -----------IAQARLTELPHFQAPEVLDSELPEQSNLPE-----NEHG--PLLLVADD 729
                       ++ A  TE  H +  +       +++ + +     +EH     +LV DD
Sbjct: 784  GETSHMHERSSLSTASTTEQRHLRFDDGRHGSRNDRAPMEDAVEQHSEHALRSKVLVVDD 843

Query: 730  EPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQ 789
             P  L  L   LR + Y V TA DG Q    ++R   ++V+ D+MMP + G+ +  +++ 
Sbjct: 844  SPEMLSYLRELLR-DDYSVATATDGEQAWALLQRRPIDVVVSDVMMPKLDGFGLTARIKA 902

Query: 790  TYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAELRRI 849
            +   A LP+I++TA   S+  V G E+GA+DY++KPF+  EL AR+ A L        R+
Sbjct: 903  SAGFAHLPVILVTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAAL--------RM 954

Query: 850  ENAQLQKELKHR----AMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARL 905
               Q +   K R    A +  ++L   G +L  +  + E +      +K +   + A  L
Sbjct: 955  GQVQTELNAKSRQAGMAEIATTVLHNVGNVLNSVNVSAELVSSQMRTSKAQGLGKVAQLL 1014



 Score = 54.7 bits (130), Expect = 4e-11
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 16/145 (11%)

Query: 546  LELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKI------V 599
            L +S  LL ++ + ++  +++ P+ ++ D  R+  +L NLIGNA K   +G I       
Sbjct: 1096 LRMSAGLLARQEVTMVKNIADLPL-LALDRHRVLLILVNLIGNA-KQALDGVIDRSPCVT 1153

Query: 600  ISATYIDDKV-RVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIE 658
             S + +D  V R+ V D G GI  E L+ IF       H  +  + G G GL       +
Sbjct: 1154 FSVSLVDGAVLRITVADNGNGIAPEHLKRIFT------HGFTTRKDGHGFGLHSCALAAQ 1207

Query: 659  LMHGTLYVSSQPM-VGTTFSFTLPL 682
             M G+L V S  +  G TF+  +PL
Sbjct: 1208 EMGGSLTVHSDGVGQGATFTLDIPL 1232