Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  180 bits (456), Expect = 7e-49
 Identities = 124/393 (31%), Positives = 204/393 (51%), Gaps = 28/393 (7%)

Query: 446 IRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIII 505
           +R+Q D+L +AN+ K EFLA  SHELRTPL+ ++ +++ L     G ++       DII 
Sbjct: 590 LREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEKQVRHADIIH 649

Query: 506 SSGQRLATLVDDLLDYHKMRYGALDIQRCAVDL-SSATRLVLELSHHLLGKKTLRIINQV 564
            +G  L  L++D+LD  K+  G + ++   ++L    T     L      K  L  I   
Sbjct: 650 RAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEVD 709

Query: 565 SEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATY------IDDKVRVQVVDTGQ 618
           ++ PV +++D  RL+Q+L NL+ NA+K+T +G++ + A+           +++QV D+G 
Sbjct: 710 ADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQLQVRDSGI 769

Query: 619 GIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSF 678
           GI  +Q E IF+   Q     SR+  G GLGL+I+RQL+E++ G + V S+   G TF+ 
Sbjct: 770 GIAKDQHERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFTV 829

Query: 679 TLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLD 738
            LP+A+    +   L               LP Q        GP LL+ +D+     V+ 
Sbjct: 830 VLPIATVSGASTQAL---------------LPPQPQ--RRGRGPGLLIIEDDTDFASVVA 872

Query: 739 SFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPI 798
              +  G+       G Q LEA++RE    V+LDI++P +SG+Q+  +LR    H  +P+
Sbjct: 873 EVGQSHGFTSLICNTGEQGLEALRREHFAAVILDILLPDISGWQIHRELRGDERHQGMPV 932

Query: 799 IMLTALNQSDDRVRGFEAGANDYLSKPFNKQEL 831
           I+++ + Q  D    +    + YL KP  + EL
Sbjct: 933 IIISCVPQPHD----WHDDGSRYLVKPVAQSEL 961



 Score = 48.5 bits (114), Expect = 3e-09
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 721  GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSG 780
            G  +L+ D++   +  L + L   G +V  A    + LE    +  +LV+LD+  PG  G
Sbjct: 1110 GQRVLLVDEDVRLIYSLTAQLDELGIQVVPATSAAEALERFDEDAFDLVVLDMSRPGAEG 1169

Query: 781  YQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKP 825
             ++  +L+Q +D  + PI+ L   N    R R   +GA++ L KP
Sbjct: 1170 PELARRLKQDHD-CQAPIVALVGANDEGARERCSASGADEVLIKP 1213



 Score = 37.0 bits (84), Expect = 1e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 855 QKELKHRAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQL 913
           ++ L++   +   L E + R  + +E  P A L    G ++  AN++AA+LF  T E L
Sbjct: 338 ERALRNSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAAQLFGSTAELL 396