Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 977 a.a., periplasmic sensor hybrid histidine kinase from Synechococcus elongatus PCC 7942

 Score =  228 bits (580), Expect = 2e-63
 Identities = 177/592 (29%), Positives = 290/592 (48%), Gaps = 43/592 (7%)

Query: 319 EQIIAAYAPINLKNIHWALVVELPEKEAFARVRQLE-----KLFVFAMLTAIVLVV--IA 371
           + ++  Y P N     W + +   E+E     R+LE      L++  +L  I+ V+  IA
Sbjct: 332 QMLLVYYRPWN-----WVIGIRQDEQEFAEPFRRLEAIQQRSLYIQLLLGVIIAVLGAIA 386

Query: 372 SHYLSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIREKISL 431
           +   +  +   + +L  AA+ +++G L +  I T  +DE+  LA +F RM  ++RE   L
Sbjct: 387 ARGWAAHLGMRIEQLAHAADAMASGQLQQ-QIPTSGRDELTVLAQAFNRMAVTLRE---L 442

Query: 432 IKSQNKELESNLLIIRKQNDELQ-------LANKLKDEFLATTSHELRTPLHGMIGIAEA 484
           + S    ++     +R+ ND L+        AN+ K  FLA  SHELRTPL+ +IG +E 
Sbjct: 443 LVSLEHRVQERTAALRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEM 502

Query: 485 LISGANGPISAAHKY-QLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATR 543
           ++  A   I           I ++G+ L  L++ +LD  K+  G +++   +  L     
Sbjct: 503 MMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELIN 562

Query: 544 LVLELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAT 603
            V  +   L+ K   +++         ++AD  +L Q L NL+ NA K+T +G I +   
Sbjct: 563 GVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQGTIQLQVA 622

Query: 604 YIDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGT 663
              D+V  +VVD+G G+  EQ++ IFE   QA    +R   G GLGLSISR  IE+M G 
Sbjct: 623 AQGDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGK 682

Query: 664 LYVSSQPMVGTTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEHGPL 723
           + V S    G+TF+ TLP   +          +P      VL  E    +   E+++ P+
Sbjct: 683 ITVESVLGEGSTFTITLPRQVQPP------QSIP--AVDPVLTDEAIATATEQEDQNQPV 734

Query: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQV 783
           +LV DDEP    +L   L  EGYRV TA  G + L+  +  +P L+ LD+MMP + G+ V
Sbjct: 735 VLVVDDEPSARELLRRMLEKEGYRVVTAAGGAEGLQRAQELRPALITLDLMMPQVDGWSV 794

Query: 784 CEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASK 843
              L+     AE+P++M++ +   + R   +  GA DYL KP ++ +L   +  +    +
Sbjct: 795 LTALKADPMLAEIPVVMVSMV---EGRSLSYALGAADYLHKPIDRDQLRRILERYTHPDR 851

Query: 844 AELRRI-----ENAQLQKELKHR---AMVEASLLETQGRLLEQLESAPEAIL 887
             L  +      N  L ++L  R    + EA+  +    +LE LE  P+ IL
Sbjct: 852 QPLALVIEDDPVNRSLLRQLLERDGWQVAEANQGQQGLAVLESLEQPPDLIL 903



 Score = 65.1 bits (157), Expect = 3e-14
 Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 722 PLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQ---VLEAIKREKPELVLLDIMMPGM 778
           PL LV +D+PVN  +L   L  +G++V  A  G Q   VLE+++ + P+L+LLD+MMP M
Sbjct: 853 PLALVIEDDPVNRSLLRQLLERDGWQVAEANQGQQGLAVLESLE-QPPDLILLDLMMPQM 911

Query: 779 SGYQVCEKLRQTYDHAELPIIMLTALNQSD-DRVR 812
            G+   + LR   +   LP+I++TA + ++ DR R
Sbjct: 912 DGFAFVDALRANGNWQTLPVIVVTAKDLTEQDRQR 946