Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  180 bits (456), Expect = 7e-49
 Identities = 126/407 (30%), Positives = 201/407 (49%), Gaps = 33/407 (8%)

Query: 440  ESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKY 499
            +SN + + +   + +LAN  K EFLA  SHE+RTP++ +IG+ +  ++G    ++   K 
Sbjct: 702  KSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQ--LAGRTS-LTEQQKD 758

Query: 500  QLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLR 559
             LD    S Q L  +++D+LD+ K+  G L++++ A  L       L+L+     +K + 
Sbjct: 759  YLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIE 818

Query: 560  IINQVSEQP-VWVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATYIDDK-----VRVQV 613
            ++        + +  DP RL QVL NL+ NA+K+T  G+I +    + ++     ++  V
Sbjct: 819  LLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKFWV 878

Query: 614  VDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVG 673
             DTG GI  EQ + +F+   QA    +R   G GLGLSIS+ L+ +M GT+ V S+P VG
Sbjct: 879  RDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVG 938

Query: 674  TTFSFTLPLASEEEIAQARLTELPHFQAPEVLDSELPEQSNLPENEHGPLLLVADDEPVN 733
            +TFSFT+     EE     +                     +PE       LV DD P  
Sbjct: 939  STFSFTVSFEIAEEAKVVPMV--------------------VPERLASLRTLVVDDNPTA 978

Query: 734  LRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDH 793
            L++  S +R   + V TA  G + L  + +++ +LVLLD MMP M G QV + + +    
Sbjct: 979  LQIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEMDGIQVIDAIDEMVAE 1038

Query: 794  AELP----IIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIV 836
             +L     II++TA      +V          L KPF    L   I+
Sbjct: 1039 GKLAARPVIIIMTAYAAEPLKVDLDSDRVFAMLQKPFKASSLFDEII 1085



 Score = 80.1 bits (196), Expect = 1e-18
 Identities = 44/123 (35%), Positives = 64/123 (52%)

Query: 709  LPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPEL 768
            LP      E EH  ++L+ +D  +N +V    L+  GY V  A +G   LE + +   + 
Sbjct: 1096 LPAPPVEDEGEHQGVVLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMVGKRSYDA 1155

Query: 769  VLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNK 828
            +L+DI MP M G     +LR+ Y   ELPII +TA   S DR +   AG N +++KP   
Sbjct: 1156 ILMDIQMPVMDGLTAATELRKRYSFDELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVL 1215

Query: 829  QEL 831
             EL
Sbjct: 1216 NEL 1218