Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  204 bits (518), Expect = 4e-56
 Identities = 165/570 (28%), Positives = 279/570 (48%), Gaps = 44/570 (7%)

Query: 395 AGDLDEAMINTERKDEIGRLAVSF----ERMQRSIREKISLIKSQNKELESNLLIIRKQN 450
           A D+ E ++  E+K E  R+  S     E+M+  I  +   I   N  L      + +  
Sbjct: 146 AEDVTEFVMLREQKLEQSRITDSLRQQAEKMEADIYARSKTIAENNLRLHQANAELARLY 205

Query: 451 DELQLANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQR 510
           ++ +  ++LK +F A  SHELRTPL  ++G     +  A+  ++ A +  L+++  + + 
Sbjct: 206 EKTRELDELKTQFFANISHELRTPLTLILGPVGKHL--ADPDLAPALRRDLEVVERNARM 263

Query: 511 LATLVDDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQP-V 569
           L   V+DLLD  K+  G + +     DL+  TR++      L   + +R +  V+  P +
Sbjct: 264 LYRHVNDLLDVAKLEAGRMVMHYTEGDLAHLTRVIASHFDSLAEGRRVRYV--VTTPPDL 321

Query: 570 WVSADPQRLEQVLYNLIGNAIKYTSEG-KIVISATYIDDKVRVQVVDTGQGIPAEQLEHI 628
               D ++ +++L NL+ NA K+  +G  I +  T    + R++V D G GIP    E +
Sbjct: 322 TAQVDAEKYQRILLNLLSNAFKFAGDGGAIQLRLTAAGGQARIEVEDNGPGIPEAMREQV 381

Query: 629 FEPLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPL-ASEEE 687
           FEP  Q    +SR+  G GLGL+I R+L +L  G++ + + P  G  F+  LPL A    
Sbjct: 382 FEPFRQVEGGSSRHHGGTGLGLAIVRELAQLHGGSVRIDAAPSSGALFTLELPLLAPPGT 441

Query: 688 IAQARLTELPHFQAPEVLDSELPEQSNLPENEHG------PLLLVADDEP-VNLRVLDSF 740
             QA+   LP   + + L+ EL     LPE+  G      PL+LV +D P +N  + ++ 
Sbjct: 442 QLQAQGEALPGDLSRQALE-ELQPPPALPEHRQGRADAALPLVLVVEDNPDMNAFICEAL 500

Query: 741 LRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIM 800
            R   YRV +A+DG + LE   R+ P+L++ D+MMP +SG ++ + LRQ    A +P+++
Sbjct: 501 GR--HYRVASARDGQEGLEMACRQTPDLIVSDVMMPRLSGDRMVQALRQEPALAGVPVVI 558

Query: 801 LTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLTASKAELRRIENAQLQKELKH 860
           LTA    D R+R  +    D+L+KPF+ +EL AR+ + LT       R++ A L      
Sbjct: 559 LTAKADEDLRIRLLQDSVQDFLNKPFSVEELLARVSSLLT------ERLQAADL------ 606

Query: 861 RAMVEASLLETQGRLLEQLESAPEAILCVKEGNKVRFANEAAARLFRRTPEQLKRSNAEE 920
                  L +++ R       A   +  V    +    N+    +     E+L     +E
Sbjct: 607 -------LRQSEKRFRATFSQAAVGMAHVAPDGRWLLVNQRLCDIIGYPREELLGRTFQE 659

Query: 921 LIAPK--FLNIEQEH--YCGNIDVYVDDVR 946
           +  P   + ++EQ H    G ID Y  + R
Sbjct: 660 ITHPDDLYSDLEQMHRLLAGEIDSYAMEKR 689



 Score = 97.8 bits (242), Expect = 4e-24
 Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 16/280 (5%)

Query: 419 ERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATTSHELRTPLHGM 478
           E +QR  +E    I   N +LE     + ++  EL+ AN+  D F    SH+LR PL  +
Sbjct: 722 EDIQRR-KEAEGEIHRLNADLERR---VEERTAELRAANRELDSFAHAVSHDLRAPLRAI 777

Query: 479 IGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYGALDIQRCAVDL 538
            G + A+I      + A  +  LD II+SGQ++  L++ LL     R    +++R  +DL
Sbjct: 778 TGFSRAIIEDHGTALPAEAREFLDHIIASGQQMGALIEGLLTL--SRSSREELRRDDIDL 835

Query: 539 SSATRLVL-ELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIGNAIKYTSEGK 597
           S+  R +L EL+    G    R+  QV E  +    D + +  VL NL+GNA KYT+   
Sbjct: 836 SALARRILEELARSEPGH---RVAWQV-EDGLVARGDIRMIGVVLRNLLGNAWKYTARTA 891

Query: 598 ---IVISATYIDDKVRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRYRQGAGLGLSISR 654
              I + A   + +++  + D G G    Q+  +F+P  Q  H    +  G G+GL+  +
Sbjct: 892 APLIRVHARRQEKQIQFCIADNGAGFDMAQVGKLFQP-FQRLHRQDEF-PGIGIGLATVQ 949

Query: 655 QLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIAQARLT 694
           +++    G++    +   G +F FTLPL   E    A  T
Sbjct: 950 RVVHRHGGSIEARGEAGHGASFCFTLPLPENEPAPPAPST 989