Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  186 bits (472), Expect = 7e-51
 Identities = 143/453 (31%), Positives = 215/453 (47%), Gaps = 38/453 (8%)

Query: 396 GDLDEAMINTERKDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQL 455
           G L  A   TERK    RL          + E   L+  + +EL        +  D    
Sbjct: 408 GVLGVARDITERK----RLEAEVSNYSHHLEE---LVAERTEELA-------RARDAANA 453

Query: 456 ANKLKDEFLATTSHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLATLV 515
           AN  K  FLA  SHE+RTP++ +IG+   L  G   P     + +LD I  +   L +++
Sbjct: 454 ANVAKSAFLANMSHEIRTPMNAIIGLTHILKKGEPSP---QQQDRLDKIDDAASHLLSII 510

Query: 516 DDLLDYHKMRYGALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVSADP 575
           +D+LD  K+    L ++   V+L      +  +      KK + + ++V   P ++  DP
Sbjct: 511 NDILDLSKIEAERLVLEEQPVELGRIVSHIFSMLAEGARKKDIVLKSEVDPLPPYLLGDP 570

Query: 576 QRLEQVLYNLIGNAIKYTSEGKI-----VISATYIDDKVRVQVVDTGQGIPAEQLEHIFE 630
            RL Q + N   NA+K+T  G +     V+  T  D  +R +V DTG GI  E    +F 
Sbjct: 571 TRLTQAILNYASNAVKFTEWGSVTLRIKVLELTPADVFLRFEVEDTGIGIAPEVQPLLFA 630

Query: 631 PLIQAGHDASRYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIAQ 690
           P  QA    SR   G GLGL I+R+L ++M G   V S+   G+TF F+  L   E  A+
Sbjct: 631 PFQQADGSTSRRFGGTGLGLVITRRLAQIMGGDAGVDSRLGFGSTFWFSARLKLGE--AR 688

Query: 691 ARLTELPHFQAPEVLDSELPE--QSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRV 748
           A L E          D   P+  +  L ++  G  +L+A+D+ +N  V    L   G RV
Sbjct: 689 AALPE----------DGPRPDSAEGELLQHYRGTPILLAEDDSINQEVARELLEYAGLRV 738

Query: 749 HTAQDGHQVLEAIKREKPE--LVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQ 806
             A DG++ +  ++R      LVL+D+ MPGM G +    +R+      LPII +TA   
Sbjct: 739 DIAADGNEAVACLERGTTPYALVLMDMQMPGMDGLEATRHIRRLPGMESLPIISMTANAF 798

Query: 807 SDDRVRGFEAGANDYLSKPFNKQELAARIVAHL 839
            +DR R  EAG ND++ KP N + L A ++  L
Sbjct: 799 GEDRERCLEAGMNDFVPKPVNPEVLYAMLLKWL 831