Pairwise Alignments

Query, 1129 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 940 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  192 bits (488), Expect = 1e-52
 Identities = 134/437 (30%), Positives = 210/437 (48%), Gaps = 27/437 (6%)

Query: 408 KDEIGRLAVSFERMQRSIREKISLIKSQNKELESNLLIIRKQNDELQLANKLKDEFLATT 467
           +D   R A   E +QR  +    L++ + ++LE       +  D  + AN  K  FLA  
Sbjct: 522 RDITARKAAEAE-LQRHRQRLEELVQERTRQLE-------ELKDAAESANVAKSAFLANM 573

Query: 468 SHELRTPLHGMIGIAEALISGANGPISAAHKYQLDIIISSGQRLATLVDDLLDYHKMRYG 527
           SHE+RTPL+ M G+   +      P  A H   +D + ++ Q L  +++ +LD  K+  G
Sbjct: 574 SHEIRTPLNAMTGLTHLIRRAGLKPQQAEH---MDKLEAAAQHLLGVINAILDLSKIEAG 630

Query: 528 ALDIQRCAVDLSSATRLVLELSHHLLGKKTLRIINQVSEQPVWVSADPQRLEQVLYNLIG 587
              ++   V + S    V       +  K L +  +    P  +  DP RL+Q L N  G
Sbjct: 631 KFALEEAPVRVESLLGNVASFLQERVQAKGLVLRTEAQPLPPHLLGDPTRLQQALLNYAG 690

Query: 588 NAIKYTSEGKIVISATYIDDK-----VRVQVVDTGQGIPAEQLEHIFEPLIQAGHDASRY 642
           NA+K+T +G I +    +++      +R +V DTG GIP E +  +F    QA +  +R 
Sbjct: 691 NALKFTEQGSITLRVHTLEEGEADALLRFEVQDTGIGIPPEAMHKLFSAFEQADNSTTRR 750

Query: 643 RQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPLASEEEIAQARLTELPHFQAP 702
             G GLGL+I+R+L +LM G    SS+P  G+TF FT  L   +E           +   
Sbjct: 751 YGGTGLGLAITRKLAQLMGGEAGASSEPGRGSTFWFTARLKKGKE----------RYGNG 800

Query: 703 EVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK 762
             L     EQ  L +   G  +L+A+DEP+N  +    L   G RV  A DG   +E  +
Sbjct: 801 APLAGGNAEQ-RLRQEFAGRTVLLAEDEPINQEITKFMLEDVGLRVELAPDGKVAVERAR 859

Query: 763 REKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYL 822
                L+L+D+ MP M G     ++RQ   H + PI+ +TA   ++D+ R   AG ND++
Sbjct: 860 GNDYALILMDMQMPLMDGLDATREIRQLQRHRQTPILAMTANAFAEDKARCLGAGMNDFI 919

Query: 823 SKPFNKQELAARIVAHL 839
           +KP N   L A ++  L
Sbjct: 920 AKPVNPDVLYATLLQWL 936



 Score = 34.3 bits (77), Expect = 5e-05
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 20/172 (11%)

Query: 263 IAEGSSNPSMQTILV---GQDHRSRTLTSAEIAVEKSKAVVDLALSGKRAVGTYTNTDGE 319
           IA   +NP     LV   GQD+RS    +A I VE       LA  G+R+      + G 
Sbjct: 119 IAWFRANPKAPDRLVEIRGQDNRSFYHYTAPIWVE----AYCLACHGERSQAP--GSIGN 172

Query: 320 QIIAAYAPINLKNIHWALVVELPEKEAFARVRQLE-----KLFVFAMLTAIVLVVIASHY 374
               AY    + ++   + ++LP ++    +RQ E       F+  +   +VL++    Y
Sbjct: 173 DYDQAYG-YQVGDLRGVMSIKLPTEQ----LRQREYGAWLHNFLIRLGGYLVLLLTLGSY 227

Query: 375 LSNFITSPLLKLTWAAERVSAGDLDEAMINTERKDEIGRLAVSFERMQRSIR 426
           L+      L +L  +   ++AG+ D    +    DEIG LA  F RM   IR
Sbjct: 228 LNRAFVGRLARLQRSVGDMAAGNYDTRS-DDAGGDEIGALAQDFNRMGEEIR 278