Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein from Pseudomonas fluorescens FW300-N2E2

 Score = 82.4 bits (202), Expect = 4e-20
 Identities = 125/543 (23%), Positives = 233/543 (42%), Gaps = 67/543 (12%)

Query: 10  LAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDF--IYEPLVVF 67
           L AA +   T  +  A A   LTI      T    F+P  +   R    F  +Y+ LV  
Sbjct: 9   LTAATLTVCTLAAGVAQAAGVLTIGCREEST---TFDPIKSAQNRDNWVFSNVYDVLVRV 65

Query: 68  NEMKGNTPVFRLAESYKMADDLMSVTFDIRKGVKWSDGEAFTADDVVYSFGLLKAKPELD 127
           +   G   V  LAES++++DD M+ TF +R   K+SDG   TA D  +S  LL+ +   D
Sbjct: 66  DNT-GTKLVPGLAESWQVSDDGMTYTFKLRSA-KFSDGSPITASDAAFS--LLRIR---D 118

Query: 128 QRGINKWVTSVEKVDEYKV----RFRLSEANSNVPYEISL----IPIVAEHVWKDVKDPT 179
            +G + W  S + +D+ +        ++  + +VP+   L    + I+++   + + +  
Sbjct: 119 NKG-SLWSDSYKIIDKAQAPDPQTLVVTLTSPSVPFLAQLALPNVSILSQKAMEKMGEEA 177

Query: 180 TFTNENPVGTGPFTVIDTFTPQLYIQCRNPNYWDAANLEVDCLRVPQIANNDQLLGKIVN 239
               ++PV +G F V +       +  +NPN+W A  + +D +    I +++  + K+  
Sbjct: 178 YA--QDPVASGTFIVKEWLRGDRVVLEKNPNFWQADKVSLDGVEWISIPDDNTRMLKVQA 235

Query: 240 SELDWTSSFVPDIDRTYAAANPN-HHYWYPAAGTQAFMVNFKNPDPAKKEALDNVDFRRA 298
            ELD ++ FVP         +PN   +  P+      ++N ++    K E       R+A
Sbjct: 236 GELD-SAIFVPFSRVETLKKDPNLVVHMDPSTREDHLLINHEHGLLGKPEV------RQA 288

Query: 299 FSMALDRQTIIDIAFYGSGTVNDFASGLGYAFEAWSDEATHKKYKGFNTYDVEGSKKLLA 358
             +A+++++++D   +G G V        Y++        H        YD E +KK+LA
Sbjct: 289 LDLAINKKSLVDTVTFGHGQV-------AYSYIP-KGALYHNADNLQRPYDPEKAKKMLA 340

Query: 359 KAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTPEFA 418
            AG             SG     ++ + N   +      L  +QL  VG+ A  +  +  
Sbjct: 341 DAG------------ASGLKLNYVVNAGNEADE--QIAVLVQQQLAAVGVTATLQKVDPT 386

Query: 419 VYNQAMLEGTYDVA---YTNYFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDG 475
              Q +++G YD++   +TN     D  T +  G+++ +        +   Y  DK  D 
Sbjct: 387 QSWQMLIDGDYDLSVMYWTNDILDPDQKTTFVLGHDTNM-------NYMTRYKNDKVKD- 438

Query: 476 LLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWMYQYNTTRFTGWWSEENPKGR 535
           L+ +     D  ++  +   +Q I  ++   I +    ++   N +R      ++NP GR
Sbjct: 439 LVAAARVEVDPTKRKQMYTDLQAIAKQDVNWIDLYYSPYI---NISRKNIEHFQQNPLGR 495

Query: 536 PSV 538
            S+
Sbjct: 496 FSL 498