Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 531 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 138/549 (25%), Positives = 229/549 (41%), Gaps = 82/549 (14%)

Query: 10  LAAAVIAAATSVSAPAFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLVVFNE 69
           L AA+ AA  SV+  A A+  L +  +  P          A      ++ I+  LV F  
Sbjct: 6   LRAAIAAALLSVAVGATAKP-LVVCTEASPEGFDMVQYTTAVTGDAVSETIFNRLVGFKP 64

Query: 70  MKGNTPVF-RLAESYKMADDLMSVTFDIRKGVKWSDGEAF------TADDVVYSFG---- 118
             G T V   LAES+ ++DD ++ TF +RKGVK+   E F       ADDVV+SF     
Sbjct: 65  --GTTEVIPALAESWDISDDGLTYTFHLRKGVKFHTTEYFKPTRDMNADDVVWSFQRQLD 122

Query: 119 --------LLKAKPELDQRGINKWVTSVEKVDEYKVRFRLSEANSNVPYEI-----SLIP 165
                        P  +  G  + + SVEKVDE+ V+F L+   +    +I     S+ P
Sbjct: 123 PNHPWHKLSSVGFPYFESMGFKELLKSVEKVDEHTVKFSLTRREAPFLADIAMAFSSIYP 182

Query: 166 IVAEHVWKDVK-DPTTFTNENPVGTGPFTVIDTFTPQLYIQCR-NPNYWDAANLEVDCLR 223
             AE+  + +K   T   N  P+GTGPF V   +     ++ + NP+Y+       D L 
Sbjct: 183 --AEYADQLLKAGKTGDLNSKPIGTGPF-VFQRYNKDAQVRFKANPDYF-LGKPPADALV 238

Query: 224 VPQIANNDQLLGKIVNSELDWTSSFVPDIDRTYAAANPNHHYWYPAAGTQAFMVNFKNPD 283
           +    +N+  + K+  +E        PD D      +PN       A   A  V++   +
Sbjct: 239 LAIATDNNVRMQKLKTNECQIALYPKPD-DIPGIKKDPN----LKVAELDAMTVSYTAMN 293

Query: 284 PAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG----TVNDFASGLGYAFEAWSDEATH 339
            + K  + +V  R+A  +A D++  ++ A +G G     VN +   L             
Sbjct: 294 TSHK-YMSDVRVRKAIDLAFDKEAYVN-ALFGKGNATVAVNPYPPTL------------- 338

Query: 340 KKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTV--Q 397
               GFN +D++   + L KA  +++  +  V  P G  F L  ++  G T+ N  +  Q
Sbjct: 339 ---LGFN-HDLKNPPRNLDKA--RELLKEAGV--PEGTVFTLFTRNGGGPTNPNPMLGAQ 390

Query: 398 LAVEQLQEVGIKAKARTPEFAVYNQAMLEGTYDVAYTNYF-HGADPFTYWNSGYN-SALQ 455
           +    L +VGIK   R  E+    +    G +D+    +     DP  +     +  A +
Sbjct: 391 MMQADLAKVGIKVDIRVMEWGEMLKRAKNGEHDMVSAGWAGDNGDPDNFLTPMLSCEAAK 450

Query: 456 SGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHGIQKIIAENQVTIPVMSGAWM 515
           +G+   R+      ++K   L+D    T +  E+  +    Q I  ++Q         W+
Sbjct: 451 NGENYARWC-----NEKFQALIDQARATVNPEERAKLYEQAQVIFNQDQ--------PWI 497

Query: 516 YQYNTTRFT 524
              +T  FT
Sbjct: 498 SMAHTRMFT 506