Pairwise Alignments

Query, 556 a.a., peptide ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 137/554 (24%), Positives = 230/554 (41%), Gaps = 99/554 (17%)

Query: 7   KTALAAAVIAAATSVSAP-AFARSELTIVPDFYPTMVRNFNPYLATNLRTTTDFIYEPLV 65
           K A+   ++ A+   SAP A A + L    +  P     F+P   T   T TDF      
Sbjct: 3   KQAVIPFLVGASLLASAPFAQAATNLVFCSEGSPA---GFDPGQYT---TGTDFDASAET 56

Query: 66  VFNEM----KGNTPVFR-LAESYKMADDLMSVTFDIRKGVK------WSDGEAFTADDVV 114
           +FN +    +G T V   LA  + ++DD ++ TF +R+GVK      +     F ADDV+
Sbjct: 57  MFNRLTQFERGGTAVIPGLATKWDISDDGLTYTFHLREGVKFHTTPYFKPTREFNADDVL 116

Query: 115 YSFGLLKAK------------PELDQRGINKWVTSVEKVDEYKVRFRLSEANS----NVP 158
           ++F  + +K            P     G++  +T ++KVD++ V+F L + ++    N+ 
Sbjct: 117 FTFNRMISKDDPFRKAYPTEFPYFTDMGMDTNITQIDKVDDHTVKFTLKDVDAAFIQNMA 176

Query: 159 YEISLIPIV--AEHVWKDVKDPTTFTNENPVGTGPFTVIDTFTPQLYIQ-CRNPNYWDAA 215
              + I     A  + K+ K P    N+ PVGTGPF V  ++     I+   N +YW   
Sbjct: 177 MSFASIQSAEYAAQLLKEGKAPD--INQKPVGTGPF-VFKSYQKDSNIRYTGNKDYWKPD 233

Query: 216 NLEVDCLRVPQIANNDQLLGKIVNSELDWTSSFVP-DI-----DRTYAAANPNHHYWYPA 269
           ++++D L      +    + K+  +E   T    P D+     D+T    +         
Sbjct: 234 DVKIDNLIFAITTDPSVRMQKLKKNECQITLFPRPADLKALKEDKTLKMPDQAGF----N 289

Query: 270 AGTQAFMVNFKNPDPAKKEALDNVDFRRAFSMALDRQTIIDIAFYGSG--TVNDFASGLG 327
            G  A+ V  K     +   L N+  R+A  MA+++  IID  + G+G   VN       
Sbjct: 290 LGYIAYNVMDKIKGSNEPNVLANLKVRQALDMAVNKPQIIDSVYQGAGQLAVNAMPP--- 346

Query: 328 YAFEAWSDEATHKKYKGFNTYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPN 387
                WS + T K  K    YD E +K+LL +AG K+         P        +Q P 
Sbjct: 347 ---TQWSYDTTIKDAK----YDPEKAKELLKEAGVKEGTNITLWAMP--------VQRP- 390

Query: 388 GWTDFNNTVQLAVEQLQ----EVGIKAKARTPEFAVY--------NQAMLEGTYDVAYTN 435
               +N   +L  E LQ    ++G+     + E+  Y        NQAM+ G        
Sbjct: 391 ----YNPNAKLMAEMLQSDWKKIGLNVNIVSYEWGEYIKRSKGGENQAMIIGWSG----- 441

Query: 436 YFHGADPFTYWNSGYNSALQSGDGMPRFAMHYFTDKKLDGLLDSFYKTADKNEQLAIAHG 495
                DP  + N  +     +G+   ++      DKK DGL+    +T D+ ++  +   
Sbjct: 442 --DNGDPDNWLNVLFGCDSLAGNNFSKWC-----DKKFDGLVKEAKRTTDQAKRTELYKQ 494

Query: 496 IQKIIAENQVTIPV 509
            Q ++ +     P+
Sbjct: 495 AQHVLKDAVPMTPI 508